PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000053.1_g00030.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family ERF
Protein Properties Length: 329aa    MW: 37369.6 Da    PI: 6.0892
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000053.1_g00030.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.63.6e-19236286255
                      AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                              +y+GVr+++ +g+++AeIrdp+ +g   r++lg+f+ta +Aaka+++a+ +l+g
  Itr_sc000053.1_g00030.1 236 HYRGVRRRP-WGKFAAEIRDPKRRG--SRIWLGTFDTAIDAAKAYDRAAFRLRG 286
                              7********.**********96554..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.3E-31235295IPR001471AP2/ERF domain
SuperFamilySSF541712.55E-22236295IPR016177DNA-binding domain
PROSITE profilePS5103224.487236294IPR001471AP2/ERF domain
SMARTSM003802.9E-35236300IPR001471AP2/ERF domain
PfamPF008478.4E-13236286IPR001471AP2/ERF domain
PRINTSPR003672.5E-13237248IPR001471AP2/ERF domain
CDDcd000186.45E-24244294No hitNo description
PRINTSPR003672.5E-13276296IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MATMDEVLTL ERIRNHLLGE FTQRECNLFN ELSNSCSANS SGTEVSSSQS ESYYSSPLTN  60
ISDHFIYGNI DDISFDFPTD YFDFEGNLLE LEPISSVSSF SSLSFEQIEG DIDILRPESQ  120
SSISSSACMS FEHSDSKRFK FEATNCNQII DLTSPEARDS NFQASFEARD SNFQASFEAR  180
DSNFQASFEA RDSKFQASLC KERKPSMSID VPAKKKFEWI VFGSSSPVRE KSERRHYRGV  240
RRRPWGKFAA EIRDPKRRGS RIWLGTFDTA IDAAKAYDRA AFRLRGRKAI LNFPSEVAKH  300
KLQMATQAAM DGGIMKQRRE AEVVKNEKP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-28235297163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019155906.10.0PREDICTED: ethylene-responsive transcription factor 5-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9632389
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47230.12e-34ethylene responsive element binding factor 5