PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000053.1_g00026.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family ERF
Protein Properties Length: 229aa    MW: 25076.8 Da    PI: 6.2577
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000053.1_g00026.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.53.3e-1855104255
                      AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                               ++GVr ++ +grWv+eIr+p++   + r++lg+f tae+Aa+a++ a+ +++g
  Itr_sc000053.1_g00026.1  55 IFRGVRKRS-WGRWVSEIREPRK---KSRIWLGTFATAEMAARAHDVAAIAIKG 104
                              59****888.**********843...6**********************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.2E-1254104IPR001471AP2/ERF domain
CDDcd000183.47E-3254114No hitNo description
SMARTSM003809.5E-3955118IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.0E-3155113IPR001471AP2/ERF domain
SuperFamilySSF541714.51E-2155113IPR016177DNA-binding domain
PROSITE profilePS5103223.07755112IPR001471AP2/ERF domain
PRINTSPR003674.0E-105667IPR001471AP2/ERF domain
PRINTSPR003674.0E-107894IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
METDDHIPTN KYQAAVSPPS TSSNEAAKES ADSRKKQTAA AAKKPKKNDD GKHPIFRGVR  60
KRSWGRWVSE IREPRKKSRI WLGTFATAEM AARAHDVAAI AIKGSSAVLN FPELAAKLPR  120
PASKSAKDVQ AAAAKAASLD YPPDPPSRTE PEPEPFSPEE TATSESSSES PSSFNEDPFL  180
GLPDLLFNPA HQAAAPEFGY TSSPWHQLAG FEPFHTDIWS EENFLWDYS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-17531121272Ethylene-responsive transcription factor ERF096
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019156035.11e-109PREDICTED: ethylene-responsive transcription factor ERF038-like
TrEMBLA0A484NPA31e-67A0A484NPA3_9ASTE; Uncharacterized protein
STRINGPGSC0003DMT4000123144e-55(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21224225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25810.14e-30ERF family protein