PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000053.1_g00010.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family GRAS
Protein Properties Length: 672aa    MW: 74219.9 Da    PI: 5.377
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000053.1_g00010.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS303.64.8e-933116714374
                     GRAS   4 lLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsP 89 
                               ++++Ae++ +gd+  a+ +Larl+++ sp  +p++R+a+yf+eAL+  l+   +  + +lpp+  ++ + + ++ a+k+fsevsP
  Itr_sc000053.1_g00010.1 311 HVFKAAEVILTGDFLHAEMILARLNHQLSPGVKPLERAAFYFKEALHLPLSM--PISATSLPPRIPTPVDGVFKMGAYKVFSEVSP 394
                              5789**********************************************99..555566999*9999****************** PP

                     GRAS  90 ilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvp 175
                              +++f ++t NqaIleav+g+e++Hi Dfdi  G+QW +++q+L  R++ +psl+iT+++sp++++  e++ ++e+L++fA+e+gv+
  Itr_sc000053.1_g00010.1 395 LIQFMNFTSNQAILEAVDGAECIHIFDFDIAFGAQWSSFMQELPRRNRRAPSLKITAFASPSTHHPIEINLMHENLTQFANEVGVK 480
                              ************************************************************************************** PP

                     GRAS 176 fefnvlvakrledl...eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfl 258
                              fe +v+  ++++       +++r ++ E++aVn+ l   + +      +++ + +L+ +k+lsPkvvv  ++  ++++ +F +++l
  Itr_sc000053.1_g00010.1 481 FELEVVNFDSFDPSsypVSSSFRSSESEVIAVNFPLWSISSY------RETLPLLLHYIKQLSPKVVVSLDRGYERTELPFPHHLL 560
                              *****944444443111234567777*********9777777......3335569******************************* PP

                     GRAS 259 ealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkv 344
                              +al+y+ alf s++a+   + e+ +k+Er+l++++i+++v    +       ++  Wr+ + +aGF p p+s++a++qa+++++++
  Itr_sc000053.1_g00010.1 561 NALQYFEALFKSIDAG-NVTPEASNKIERFLFQPSIESIVFGHLRF----PDQMPPWRNLFASAGFLPQPFSNFAETQAECVVKRT 641
                              *************887.567899*****************998887....8999******************************** PP

                     GRAS 345 ksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                              + +g++v+++++sl l+W++r+L+s++aWr
  Itr_sc000053.1_g00010.1 642 ETRGFHVQKHHASLALCWQNRELLSATAWR 671
                              *****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098543.146282651IPR005202Transcription factor GRAS
PfamPF035141.7E-90311671IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 672 aa     Download sequence    Send to blast
MIGMQYNSNS LQGKSVLEVS RFGSAISPSL VPSDAAKLKK NGGFSSSEPV SVLDTRSPSP  60
STSTSAMEAN PNPVGRKENS LGELHPAPEW SEGPEKFDLG MEDWEGLLPE SGGSDQFLLR  120
WISGDVEDPS LSLKQLLQGG NPSEIHCNVG FGASDSDNYN GNSQGPNVNF PLAILGSGLS  180
VQELKNEQKP QNFNSPVLSE LQNVVTIPNV FSSELYGIQQ EQPPLKRQNL GGVSSSGFRV  240
SEGGVFVNPS NGLLVRKQVE LGQLEQAQIG CDRPPDILCV HRGEQAPLLV PKREAGFGND  300
SLQEQQAVYD HVFKAAEVIL TGDFLHAEMI LARLNHQLSP GVKPLERAAF YFKEALHLPL  360
SMPISATSLP PRIPTPVDGV FKMGAYKVFS EVSPLIQFMN FTSNQAILEA VDGAECIHIF  420
DFDIAFGAQW SSFMQELPRR NRRAPSLKIT AFASPSTHHP IEINLMHENL TQFANEVGVK  480
FELEVVNFDS FDPSSYPVSS SFRSSESEVI AVNFPLWSIS SYRETLPLLL HYIKQLSPKV  540
VVSLDRGYER TELPFPHHLL NALQYFEALF KSIDAGNVTP EASNKIERFL FQPSIESIVF  600
GHLRFPDQMP PWRNLFASAG FLPQPFSNFA ETQAECVVKR TETRGFHVQK HHASLALCWQ  660
NRELLSATAW RC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A8e-3233167126375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019156733.10.0PREDICTED: scarecrow-like protein 6 isoform X2
TrEMBLA0A1J6IGI60.0A0A1J6IGI6_NICAT; Scarecrow-like protein 6
STRINGXP_009803487.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA69861931
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.17e-99GRAS family protein