PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000052.1_g00039.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family GeBP
Protein Properties Length: 319aa    MW: 35631.6 Da    PI: 7.5621
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000052.1_g00039.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57385.95.3e-2769163297
                   DUF573   2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqk 87 
                              +f+r+w+e+Dei +LqGl+d+ a+       d++ fy  +++ +s  ++ksql+eK+rrL+kKf+  +++ ++g++ s+ ++hd+ 
  Itr_sc000052.1_g00039.1  69 KFHRIWTESDEIRFLQGLLDCGAESL-AFPRDLNVFYTRFSSTMSQPYTKSQLSEKLRRLRKKFRVISARLAKGHDSSLLSPHDRA 153
                              699******************77766.5567******************************************************* PP

                   DUF573  88 ifelskkiWg 97 
                               +++sk++W+
  Itr_sc000052.1_g00039.1 154 LYDISKRLWH 163
                              *********7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045041.1E-2870163IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MVQPCPLFIA MDMDIHSNPT QTLKSSASKL PIKRKTPPNS FTSSAPDSPP DAVVHGGCNG  60
QEPAPPPFKF HRIWTESDEI RFLQGLLDCG AESLAFPRDL NVFYTRFSST MSQPYTKSQL  120
SEKLRRLRKK FRVISARLAK GHDSSLLSPH DRALYDISKR LWHPDFAAKS PFCYNGNSEA  180
PKKSGLVGVA VSFMPSLPSI LASNHSAIED TIKTNDEIGL DGDVKLREVN VELDDDGIAV  240
EKMANLSGVG AKVVVDVFDE CLRELRKDIV GEKSSLDGCF KQGNVEESFE ERWRKQRVAE  300
LDVFSKRMRL VIDHSLHMQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019185423.11e-175PREDICTED: probable transcription factor At5g28040
TrEMBLA0A0V0HTA41e-101A0A0V0HTA4_SOLCH; Putative ovule protein
TrEMBLM1DZF31e-101M1DZF3_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000968751e-102(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA128221921
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28040.12e-19DNA-binding storekeeper protein-related transcriptional regulator