PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000052.1_g00006.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family ERF
Protein Properties Length: 144aa    MW: 15787 Da    PI: 9.4856
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000052.1_g00006.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.71.4e-181666255
                      AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                             +y GVr ++ +g+++AeIrd + ng   r++lg+f++aeeAa a+++a++ ++g
  Itr_sc000052.1_g00006.1 16 QYVGVRKRP-WGKYAAEIRDSTRNG--LRVWLGTFDSAEEAALAYDQAALLMRG 66
                             699******.**********44465..***********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.0E-271574IPR001471AP2/ERF domain
CDDcd000182.18E-261674No hitNo description
SuperFamilySSF541713.14E-211675IPR016177DNA-binding domain
SMARTSM003809.4E-341680IPR001471AP2/ERF domain
PROSITE profilePS5103221.0481674IPR001471AP2/ERF domain
PfamPF008471.3E-121766IPR001471AP2/ERF domain
PRINTSPR003671.6E-91728IPR001471AP2/ERF domain
PRINTSPR003671.6E-94056IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 144 aa     Download sequence    Send to blast
MTCKAVVDSS AKKERQYVGV RKRPWGKYAA EIRDSTRNGL RVWLGTFDSA EEAALAYDQA  60
ALLMRGPTTF LNLPLDTVRD SLKGMRCGGD KAASSPVATL KESYKRRSST SMFGGNNKRG  120
IELDKVLVLE DLGPELLDEL LSAS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-251375264ATERF1
3gcc_A2e-251375264ATERF1
5wx9_A2e-2516761474Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the GCC-box cis-acting elements found in the promoter regions of ethylene-responsive genes (PubMed:23057995). Acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates pathogen-responsive genes (PubMed:28733419). {ECO:0000269|PubMed:23057995, ECO:0000269|PubMed:28733419}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding and infection with the fungal pathogen Botrytis cinerea. {ECO:0000269|PubMed:28733419}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019185677.13e-90PREDICTED: ethylene-responsive transcription factor 1B-like
SwissprotA0A3Q7I5Y94e-44ERFC3_SOLLC; Ethylene-response factor C3
TrEMBLA0A1U7VS011e-52A0A1U7VS01_NICSY; ethylene-responsive transcription factor 1B-like
STRINGXP_009764685.12e-53(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31230.14e-26ethylene-responsive element binding factor 15
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Pirrello J, et al.
    Functional analysis and binding affinity of tomato ethylene response factors provide insight on the molecular bases of plant differential responses to ethylene.
    BMC Plant Biol., 2012. 12: p. 190
    [PMID:23057995]
  3. Du M, et al.
    MYC2 Orchestrates a Hierarchical Transcriptional Cascade That Regulates Jasmonate-Mediated Plant Immunity in Tomato.
    Plant Cell, 2017. 29(8): p. 1883-1906
    [PMID:28733419]