PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000049.1_g00036.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

HB-other

Protein Properties

Length: 923aa MW: 101771 Da PI: 6.3295

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000049.1_g00036.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	40.7	4.1e-13	22	69	9	56
HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 9 keqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 + q+e+Le+++ +ryp + +eeL++klgL+ +qV WFq rR+ + Itr_sc000049.1_g00036.1 22 TAQIEILESYYFLDRYPAPDLIEELSAKLGLSYQQVLGWFQYRRQEDQ 69 68******************************************9765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00389	9.1E-8	17	75	IPR001356	Homeobox domain
SuperFamily	SSF46689	5.13E-11	18	70	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	5.5E-10	22	70	IPR009057	Homeodomain-like
Pfam	PF00046	1.0E-10	22	69	IPR001356	Homeobox domain
CDD	cd00086	1.89E-8	24	71	No hit	No description
PROSITE profile	PS50071	12.276	24	71	IPR001356	Homeobox domain
PROSITE profile	PS50827	8.621	368	424	IPR018501	DDT domain
SMART	SM00571	2.3E-9	368	424	IPR018501	DDT domain
Pfam	PF02791	1.6E-8	375	421	IPR018501	DDT domain
SMART	SM00571	2.1E-13	658	717	IPR018501	DDT domain
PROSITE profile	PS50827	12.448	658	717	IPR018501	DDT domain
Pfam	PF02791	2.4E-11	661	714	IPR018501	DDT domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 923 aa Download sequence Send to blast
MEIGGGSGTG FDRNDNLKRK ATAQIEILES YYFLDRYPAP DLIEELSAKL GLSYQQVLGW 60 FQYRRQEDQK RIAIGIPLHK VASTMPMASS IAVGEVWGKP VPGSPYGRLM VQQPGVRVPS 120 FGNEGLSTRR YDQFPWTIQH SRAVAAVEKQ LGGHFIDNGP VLGFNFDPLP PGAFHTPIEP 180 AVHYKQGGQS HRAELHGGPI QATNQTSLQY QFTQGESSSA AAAYGPRVPP GYYSSPAEAQ 240 TIAIALSGGS SYVHGTQLPI SGLLRPQGIQ SSISQSLGAH VVPQSSSRLN MRVDAIFGGC 300 STTGEENPLM PSGTQAIGDN RLLARNWKSK DANVGRKVEA QEKRLIDGLI EELDTLRQKG 360 SSVTLLGKLT ALLYLQVWRF LICFADALSL SPFTIDEFVH DTDSRLLGQV HIMLLRSIIK 420 DIEGAVNSGG GNPRIVEGAY ARDFNISSWQ SHLNPLTWPE ILRQFALSAG FGPELKKRNI 480 EPASSSDESK GDDDTDTSAS SPNDVAAENA ASATVATFSI PGNTVNEKSD GEEWVQRIME 540 EEYSDLSVEE RLDAFERIEA ASARVDANFG GCSITGEENP LMPSGTQAIR GNRLLARNWK 600 SKDANLGRKV EAQEKRLIDG LIEELARHVK AKDKCGEFPP KSVCLKKPFR AQPWIDSDMN 660 VTNLLMVWRF LICFADARSL SPFTIDALVQ AFHDTDSRLL GQVHIMLLRS ITKDIECAAN 720 SGGGNPHIVE GFKTSSSSND PGSGRIFVHL CEGWWRLIDL EKPQLRSMLQ QIEAAFKENA 780 RKLQNNSDTR ARENNDVSRR YSDFEKWMWD ECLDDSTLLS AMKWGEGRRK KLLHDRIPNE 840 AFESGWSKKH CKHWGLRLIS ASSSEDLLQL ILALLDGAIK RKLLASEACR DDLEGIPCTT 900 SALALRLGEV DESFHCRLLE AGN

Sequence ? help Back to Top

Protein Sequence Length: 923 aa Download sequence Send to blast

MEIGGGSGTG FDRNDNLKRK ATAQIEILES YYFLDRYPAP DLIEELSAKL GLSYQQVLGW  60
FQYRRQEDQK RIAIGIPLHK VASTMPMASS IAVGEVWGKP VPGSPYGRLM VQQPGVRVPS  120
FGNEGLSTRR YDQFPWTIQH SRAVAAVEKQ LGGHFIDNGP VLGFNFDPLP PGAFHTPIEP  180
AVHYKQGGQS HRAELHGGPI QATNQTSLQY QFTQGESSSA AAAYGPRVPP GYYSSPAEAQ  240
TIAIALSGGS SYVHGTQLPI SGLLRPQGIQ SSISQSLGAH VVPQSSSRLN MRVDAIFGGC  300
STTGEENPLM PSGTQAIGDN RLLARNWKSK DANVGRKVEA QEKRLIDGLI EELDTLRQKG  360
SSVTLLGKLT ALLYLQVWRF LICFADALSL SPFTIDEFVH DTDSRLLGQV HIMLLRSIIK  420
DIEGAVNSGG GNPRIVEGAY ARDFNISSWQ SHLNPLTWPE ILRQFALSAG FGPELKKRNI  480
EPASSSDESK GDDDTDTSAS SPNDVAAENA ASATVATFSI PGNTVNEKSD GEEWVQRIME  540
EEYSDLSVEE RLDAFERIEA ASARVDANFG GCSITGEENP LMPSGTQAIR GNRLLARNWK  600
SKDANLGRKV EAQEKRLIDG LIEELARHVK AKDKCGEFPP KSVCLKKPFR AQPWIDSDMN  660
VTNLLMVWRF LICFADARSL SPFTIDALVQ AFHDTDSRLL GQVHIMLLRS ITKDIECAAN  720
SGGGNPHIVE GFKTSSSSND PGSGRIFVHL CEGWWRLIDL EKPQLRSMLQ QIEAAFKENA  780
RKLQNNSDTR ARENNDVSRR YSDFEKWMWD ECLDDSTLLS AMKWGEGRRK KLLHDRIPNE  840
AFESGWSKKH CKHWGLRLIS ASSSEDLLQL ILALLDGAIK RKLLASEACR DDLEGIPCTT  900
SALALRLGEV DESFHCRLLE AGN

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019172469.1	1e-171	PREDICTED: homeobox-DDT domain protein RLT1-like
STRING	XP_009773812.1	7e-49	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2142	23	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28420.1	7e-39	homeobox-1