PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc000047.1_g00036.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | C2H2 | ||||||||
Protein Properties | Length: 210aa MW: 21913.3 Da PI: 3.8826 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.3 | 0.0005 | 110 | 132 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++Cg ++++ + H+r+H Itr_sc000047.1_g00036.1 110 FACEICGARYPTEKAMFGHLRSH 132 78*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00355 | 0.0086 | 110 | 132 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 3.6E-7 | 110 | 134 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 8.725 | 110 | 132 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 112 | 132 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048235 | Biological Process | pollen sperm cell differentiation | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 210 aa Download sequence Send to blast |
MASGKETTVA SSSMGEGSGG SQKAAEGVTV AVAPPPSSSL PVPQPAPVED RDSPVPVPPM 60 ENVMEGDAPP LPLEPVAVEE GGDVVAAGEI APAGQAAGEI APAGQAAGDF ACEICGARYP 120 TEKAMFGHLR SHKDRGWRGA FSPPTFSIEE FAEYQEHLVK PEEEQLREIE AEERAAAGER 180 VVLDVDLNVE VAPVEEFILP DLNLPPPDED |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A484MGR1 | 5e-27 | A0A484MGR1_9ASTE; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA9281 | 7 | 13 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35700.1 | 3e-10 | C2H2 family protein |