PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc000047.1_g00028.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | C2H2 | ||||||||
Protein Properties | Length: 128aa MW: 14056 Da PI: 9.4195 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 15.4 | 5.2e-05 | 24 | 44 | 1 | 21 |
EEETTTTEEESSHHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHir 21 + C+ Cg+ F+++ L H+r Itr_sc000047.1_g00028.1 24 HICTVCGRLFNSRQALLGHMR 44 68******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 4.11E-5 | 21 | 47 | No hit | No description |
PROSITE profile | PS50157 | 9.868 | 24 | 49 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 9.1E-7 | 24 | 45 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 128 aa Download sequence Send to blast |
MSRNNANGSS SFNSLPPAQP QQNHICTVCG RLFNSRQALL GHMRHNSSHG WRILYPHFFN 60 RGHLANVLRR PEIPVVGGQV AAAPLPPIAA PPVDNAPLAQ PEVLVELPDL NEPRQYRVPD 120 LNFPPPPA |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A328DQD6 | 1e-18 | A0A328DQD6_9ASTE; Uncharacterized protein |