PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000047.1_g00026.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family C2H2
Protein Properties Length: 155aa    MW: 16289 Da    PI: 4.5086
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000047.1_g00026.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.23.3e-065173123
                             EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                             + C  C ++F+++  L  H+r+H
  Itr_sc000047.1_g00026.1 51 HICAVCERRFNTRQALFGHMRVH 73
                             68*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.6E-64875No hitNo description
Gene3DG3DSA:3.30.160.602.9E-44973IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.9515173IPR007087Zinc finger, C2H2
SMARTSM003550.00225173IPR015880Zinc finger, C2H2-like
PfamPF139121.6E-65173IPR007087Zinc finger, C2H2
PROSITE patternPS0002805373IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 155 aa     Download sequence    Send to blast
MSTNNADNGS SSLNSGHRGG GGGSDSITAV PIENAPPPPP PPPPAQPQQN HICAVCERRF  60
NTRQALFGHM RVHGSRGWRG ALPPPVFNRD EFADVLPLLA TGEDADAPPP PADNAPPPQP  120
EGLPDNAPPP QPEALPDLNE HQYIVPDLNF PPPPA
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A328DQD64e-30A0A328DQD6_9ASTE; Uncharacterized protein
TrEMBLA0A484NEG64e-30A0A484NEG6_9ASTE; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35610.14e-09C2H2 family protein