PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000046.1_g00026.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family GRAS
Protein Properties Length: 793aa    MW: 85493.1 Da    PI: 6.4042
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000046.1_g00026.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS415.93.6e-1274287872374
                     GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsev 87 
                               +lLl+cAeav++++l +a+++L ++sel++p+g++ qR+aayf eA++arl++s+ ++y++ p ++ +++  ++ ++a+++f+ +
  Itr_sc000046.1_g00026.1 428 LTLLLQCAEAVAADNLDEANRMLLQVSELSTPYGTSAQRVAAYFSEAMSARLVNSCLGIYASAPLNALPHSLNQKMASAFQVFNGI 513
                              579******************************************************************999************** PP

                     GRAS  88 sPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelg 173
                              sP++kfsh+taNqaI ea+e+e+rvHiiD+di+qGlQWp L++ LasRp+gpp +R+Tg+g     s e+le+tg+rL++fA++lg
  Itr_sc000046.1_g00026.1 514 SPFVKFSHFTANQAIQEAFEREDRVHIIDLDIMQGLQWPGLFHILASRPGGPPLVRLTGLGT----SMEALEATGKRLSDFAQKLG 595
                              **************************************************************....******************** PP

                     GRAS 174 vpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfle 259
                              +pfef + va+++ +l++++L+v+++Ea+aV++    h+l+d ++s ++    +L+l+++l Pkvv+vveq+++h ++sFl rf+e
  Itr_sc000046.1_g00026.1 596 LPFEFFP-VADKVGNLDPQRLNVNKREAVAVHWLQ--HSLYDVTGSDTN----TLWLLQRLAPKVVTVVEQDLSH-AGSFLGRFVE 673
                              *******.7*************************9..999999999999....**********************.899******* PP

                     GRAS 260 aleyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk 345
                              a++yysalfdsl a +++eseer+ vE++ll+rei+nv+a  g +r  + + +++Wre+++++GF+ v+l  +aa+qa lll +++
  Itr_sc000046.1_g00026.1 674 AIHYYSALFDSLGACYGEESEERHAVEQQLLSREIRNVLAVGGPSRSGEVK-FNNWREKFQQSGFRGVSLAGNAAAQATLLLGMFH 758
                              *********************************************888776.********************************** PP

                     GRAS 346 sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                              sdgy++ e++g+l lgWkd  L+++SaWr
  Itr_sc000046.1_g00026.1 759 SDGYTLAEDNGALKLGWKDLCLLTASAWR 787
                              ****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098561.497401767IPR005202Transcription factor GRAS
PfamPF035141.2E-124428787IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 793 aa     Download sequence    Send to blast
MAAKAFPMVG EAANVSGSSG SATSSREYHH HDHNNILPLH SSSASPSHLA LLCDNAKMVR  60
KRAASEMELQ IGGGGGIGEH GRFLRRTAAA GMNAPLLGDL RVCGGNFGGG DESNDNGGGN  120
SHHVVVNNYS TMQIAPPPSS TNLSVTSTSD ATHLTYMETL PLPNPPPNEA QPLPLCVFSG  180
LPLFPAPTRA RNAAGALQPP PLPAAGCGGS AIGVNSSGGM GDNGTAMAWI DGIIKDLIHS  240
STHVSIPQLI QNVREIIHPC NPNLAALLEY RLRSLTTADP LAANVYDDWR RKETLQPQSQ  300
DAAITNPLHL PDSMPHPWEI TLPPAAATAS TTRHHHHQQQ HQLRDNSPSV TAGLPFVPAP  360
SSDRQEQQQQ PGRMDHEKQP ESQSQSQSPP PTESTAAAAA ALIRTESLRR EKDELEQQKK  420
DEEGLHLLTL LLQCAEAVAA DNLDEANRML LQVSELSTPY GTSAQRVAAY FSEAMSARLV  480
NSCLGIYASA PLNALPHSLN QKMASAFQVF NGISPFVKFS HFTANQAIQE AFEREDRVHI  540
IDLDIMQGLQ WPGLFHILAS RPGGPPLVRL TGLGTSMEAL EATGKRLSDF AQKLGLPFEF  600
FPVADKVGNL DPQRLNVNKR EAVAVHWLQH SLYDVTGSDT NTLWLLQRLA PKVVTVVEQD  660
LSHAGSFLGR FVEAIHYYSA LFDSLGACYG EESEERHAVE QQLLSREIRN VLAVGGPSRS  720
GEVKFNNWRE KFQQSGFRGV SLAGNAAAQA TLLLGMFHSD GYTLAEDNGA LKLGWKDLCL  780
LTASAWRPPP LAQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A0.04127884380Protein SCARECROW
5b3h_A0.04127883379Protein SCARECROW
5b3h_D0.04127883379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor involved in asymmetric cell division (By similarity). Required for differentiation of endodermis and graviresponses. {ECO:0000250, ECO:0000269|PubMed:16339910}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB2003910.0AB200391.1 Ipomoea nil PnSCR mRNA for SCARECROW, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019162745.10.0PREDICTED: protein SCARECROW
SwissprotQ2Z2E90.0SCR_IPONI; Protein SCARECROW
TrEMBLA0A328D5M70.0A0A328D5M7_9ASTE; Uncharacterized protein
STRINGSolyc10g074680.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA82582430
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54220.10.0GRAS family protein