PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc000045.1_g00004.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | NAC | ||||||||
Protein Properties | Length: 626aa MW: 68894.5 Da PI: 5.2634 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 131.2 | 7.4e-41 | 24 | 151 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWk 84 lppG+rF+Ptd el+ +yLkkkv +++++l + ik+++iyk++P+dL + + a+eke yfF++rdkky++g r+ r++ +g+Wk Itr_sc000045.1_g00004.1 24 LPPGIRFRPTDGELM-DYLKKKVLKERMPL-HRIKTCNIYKYHPNDLCRpdDL-AREKESYFFTSRDKKYPNGARPDRKAGDGFWK 106 79*************.**************.77**************532243.5789**************************** PP NAM 85 atgkdkevlskkgelvglkktLvfykgrapkge..ktdWvmheyrl 128 atg+d ++ + kg++vg kktLv+y+g++++ + kt+W+mhey++ Itr_sc000045.1_g00004.1 107 ATGRDMPISC-KGAVVGSKKTLVYYEGKHKDVSlhKTNWIMHEYTI 151 **********.999***********8866654334*********86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.57E-41 | 22 | 186 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 40.788 | 24 | 187 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.1E-20 | 25 | 151 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 626 aa Download sequence Send to blast |
MEKEEATLAM EVEKGLSDRY FKSLPPGIRF RPTDGELMDY LKKKVLKERM PLHRIKTCNI 60 YKYHPNDLCR PDDLAREKES YFFTSRDKKY PNGARPDRKA GDGFWKATGR DMPISCKGAV 120 VGSKKTLVYY EGKHKDVSLH KTNWIMHEYT INPNIKITPV AQGQSDNNNN NDNNILDECV 180 LAKIYEKTTG SKKGADNNCS PSQDDTQQIL DSEQIPPEEQ DNPILEPQEY PTAEQVAPPP 240 PQNQNHQNPM AGATGGGGYN TNMIILQGSE QLPLPPPEAQ NNPILEPQQY SRAIHMGSLT 300 GPNNEIRAQN NPILEPQQYS RATHMGSLTG PNSEVRAQNN PILEPQQYPM ATRIDSLTGS 360 MGGVRVQNNP ILEPQQYPMA TRMGSLIGPN NEIRAQNPIL KPQQHPTANR MDSLTGPKGE 420 VGTQNNPIPK PQQYPTTTHM NNLTGHNGEI LKEDYSTALQ AAAAAAAASY PNHQNPIAGA 480 AAAAAYHRYM MIPVSEQPPL PPPEAQENPI LEQVAELPPF PYQENPMDVA AAAAATFYSW 540 DAGSYGYESL QTDENFYGIN SGAFSFEENN NGFWGSLNGG LEDVVNMYIG NNVNNPSANP 600 HGQANNAGDN VNPSHNPHGP ANVSDK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 9e-34 | 23 | 193 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 9e-34 | 23 | 193 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 9e-34 | 23 | 193 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 9e-34 | 23 | 193 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 9e-34 | 23 | 193 | 19 | 174 | NAC domain-containing protein 19 |
3swm_B | 9e-34 | 23 | 193 | 19 | 174 | NAC domain-containing protein 19 |
3swm_C | 9e-34 | 23 | 193 | 19 | 174 | NAC domain-containing protein 19 |
3swm_D | 9e-34 | 23 | 193 | 19 | 174 | NAC domain-containing protein 19 |
3swp_A | 9e-34 | 23 | 193 | 19 | 174 | NAC domain-containing protein 19 |
3swp_B | 9e-34 | 23 | 193 | 19 | 174 | NAC domain-containing protein 19 |
3swp_C | 9e-34 | 23 | 193 | 19 | 174 | NAC domain-containing protein 19 |
3swp_D | 9e-34 | 23 | 193 | 19 | 174 | NAC domain-containing protein 19 |
4dul_A | 9e-34 | 23 | 193 | 16 | 171 | NAC domain-containing protein 19 |
4dul_B | 9e-34 | 23 | 193 | 16 | 171 | NAC domain-containing protein 19 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019186425.1 | 5e-73 | PREDICTED: uncharacterized protein LOC109181125 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G27410.2 | 1e-38 | NAC family protein |