PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc000043.1_g00004.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | GRAS | ||||||||
Protein Properties | Length: 142aa MW: 15994.3 Da PI: 7.6361 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 21.4 | 2.6e-07 | 1 | 43 | 1 | 43 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaa 43 +++ L++cAe +s +d+++a++l++ l + sp +d+ +Rla Itr_sc000043.1_g00004.1 1 MRQFLISCAELISRSDFSAAHRLISFLASNTSPFADSSERLAC 43 5789*************************************96 PP | |||||||
2 | GRAS | 100.7 | 2.2e-31 | 52 | 134 | 86 | 171 |
GRAS 86 evsPilkfshltaNqaIleavege..ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfA 169 ++P+++f+hltaNqaIlea++ +++Hi+Dfd+++G+QWp+L+qaLa+R +pp+lRiTg ++ + + l++tg+ LakfA Itr_sc000043.1_g00004.1 52 PITPFIRFTHLTANQAILEAIDDGqrNAIHILDFDVMHGIQWPPLMQALADR-YPPPKLRITGTEN----DMDILRRTGDGLAKFA 132 589******************97756899**********************9.999**********....**************** PP GRAS 170 ee 171 ++ Itr_sc000043.1_g00004.1 133 HR 134 86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03514 | 9.0E-5 | 1 | 43 | IPR005202 | Transcription factor GRAS |
PROSITE profile | PS50985 | 23.682 | 1 | 142 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 7.6E-29 | 52 | 134 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 142 aa Download sequence Send to blast |
MRQFLISCAE LISRSDFSAA HRLISFLASN TSPFADSSER LACSVLLFVS QPITPFIRFT 60 HLTANQAILE AIDDGQRNAI HILDFDVMHG IQWPPLMQAL ADRYPPPKLR ITGTENDMDI 120 LRRTGDGLAK FAHRGSQRWL SQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_A | 3e-19 | 8 | 134 | 25 | 184 | Protein SCARECROW |
5b3h_D | 3e-19 | 8 | 134 | 25 | 184 | Protein SCARECROW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription regulator that controls rice tillering by initiating axillary buds and promoting their outgrowth. Rice tiller is a specialized grain-bearing branch that is formed on the unelongated basal internode and grows independently of the mother stem (culm) by means of its own adventitious roots. {ECO:0000269|PubMed:12687001}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019183097.1 | 2e-64 | PREDICTED: scarecrow-like protein 18 | ||||
Swissprot | Q84MM9 | 1e-24 | MOC_ORYSJ; Protein MONOCULM 1 | ||||
TrEMBL | A0A484K959 | 5e-57 | A0A484K959_9ASTE; Uncharacterized protein | ||||
STRING | XP_009765072.1 | 6e-55 | (Nicotiana sylvestris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G55580.1 | 3e-25 | GRAS family protein |