PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc000039.1_g00056.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | ERF | ||||||||
Protein Properties | Length: 350aa MW: 38000.6 Da PI: 8.2205 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 54.9 | 2.2e-17 | 65 | 114 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +gr++AeIrdp + r +lg+f+taeeAa a++ a+++++g Itr_sc000039.1_g00056.1 65 RYRGVRRRP-WGRYAAEIRDPQ----SkERRWLGTFDTAEEAACAYDCAARAMRG 114 59*******.**********93....35999**********************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 4.12E-21 | 65 | 122 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 8.6E-11 | 65 | 114 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.089 | 65 | 122 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.01E-30 | 65 | 121 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 3.8E-29 | 65 | 121 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 8.4E-33 | 65 | 128 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.9E-9 | 66 | 77 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.9E-9 | 88 | 104 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009880 | Biological Process | embryonic pattern specification | ||||
GO:0048825 | Biological Process | cotyledon development | ||||
GO:0051726 | Biological Process | regulation of cell cycle | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 350 aa Download sequence Send to blast |
MEETMRRLNT LTHSSDLLHV KPSFPAPSKR CTTAATATTT VTAAGNNKRA LRDAAADSAG 60 ATKMRYRGVR RRPWGRYAAE IRDPQSKERR WLGTFDTAEE AACAYDCAAR AMRGVKARTN 120 FVYPPPLATA AAAADCFSHP LYSTNKFTSH HQISLKDLPT KQFFQSTFSN PYNLSRKMNK 180 PLNTLPVTDF LNPSSTAAAA APNIHLPSML NNNNVFCTAV SLPAFPEPPA KNPNTQIEET 240 GMDFFPSEPS GSGLLEEVLN GFFPKPNPSN PDPSPAVGSF AGKTTVNNQF GVFQGGVGVQ 300 GQFGDSITGF EDSSLPFQND FSANFQISPE IMLGDILHQF PDPLNVFTAN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-20 | 53 | 121 | 2 | 71 | Ethylene-responsive transcription factor ERF096 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019176467.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor ESR2-like | ||||
TrEMBL | A0A328DBR3 | 4e-88 | A0A328DBR3_9ASTE; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G24590.1 | 6e-19 | DORNROSCHEN-like |