PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000039.1_g00012.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MYB
Protein Properties Length: 239aa    MW: 27571.3 Da    PI: 6.5123
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000039.1_g00012.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding39.31.5e-121461148
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                             rg+WT eEd +l   +   G  +W+++++  g+ R++k+c++rw +yl
  Itr_sc000039.1_g00012.1 14 RGPWTIEEDHKLMTFILNNGIQCWRLVPKLAGLMRCGKSCRLRWINYL 61
                             89********************************************97 PP
2Myb_DNA-binding55.61.2e-1767110146
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                              rg+ T+ E+e +++++ qlG++ W++Ia++++ gRt++++k++w++
  Itr_sc000039.1_g00012.1  67 RGALTEAEEEMIIKLHSQLGNR-WSKIAAHFP-GRTDNEIKNHWNT 110
                              7889******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.3E-21564IPR009057Homeodomain-like
PROSITE profilePS5129414.761961IPR017930Myb domain
SuperFamilySSF466892.86E-2811108IPR009057Homeodomain-like
SMARTSM007174.0E-51363IPR001005SANT/Myb domain
PfamPF002493.8E-111461IPR001005SANT/Myb domain
CDDcd001671.06E-41661No hitNo description
PROSITE profilePS5129427.96762116IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.4E-2665117IPR009057Homeodomain-like
SMARTSM007174.6E-1666114IPR001005SANT/Myb domain
PfamPF002492.1E-1567110IPR001005SANT/Myb domain
CDDcd001673.36E-1271110No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MGRQPCCDKV GLKRGPWTIE EDHKLMTFIL NNGIQCWRLV PKLAGLMRCG KSCRLRWINY  60
LRPDLKRGAL TEAEEEMIIK LHSQLGNRWS KIAAHFPGRT DNEIKNHWNT RIKKKLKLRG  120
LDPTTHKPLD QPGSSIAKIN GVDDHNQQQS SSSGEEEMMI MKKDYPIPNY EYALQQTLNS  180
SLDESLELES NIIPAGSEDM DNLSMDMYNP DDQRQEPYQT WIGSPLQWDL FNNLDGNFL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-29121165108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as positive regulator of abscisic acid (ABA) signaling in response to salt stress. Acts as negative regulator ABI1, ABI2 and PP2CA, which are protein phosphatases 2C acting as negative regulator of ABA signaling. Binds to the DNA specific sequence and core element 5'-ACGT-3' found in the promoters of ABI1 and PP2CA to negatively regulate their expression during ABA-dependent salt stress response. {ECO:0000269|PubMed:23660402}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00510DAPTransfer from AT5G14340Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress, drought stress and abscisic acid (ABA). Down-regulated by salicylic acid (SA) methyl jasmonate (JA). {ECO:0000269|PubMed:23660402}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019176697.11e-177PREDICTED: myb-related protein 315
SwissprotQ9C7U74e-73MYB20_ARATH; Transcription factor MYB20
TrEMBLA0A1J6HYF81e-102A0A1J6HYF8_NICAT; Myb-related protein pp2
STRINGXP_009779623.11e-102(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14340.14e-81myb domain protein 40
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]