PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000038.1_g00001.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MYB
Protein Properties Length: 370aa    MW: 41100.5 Da    PI: 7.4661
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000038.1_g00001.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.79.8e-171462148
                             TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                             +g+W++eEd +l+ +++++G+g +W + ++++g++R++k+c++rw++yl
  Itr_sc000038.1_g00001.1 14 KGPWSPEEDAKLKAYIEEHGTGgNWIALPQKIGLKRCGKSCRLRWLNYL 62
                             79*********************************************97 PP
2Myb_DNA-binding37.55.5e-1269111246
                              SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
          Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                              g +++eEd ++  ++   G++ W+ Ia+ ++ gRt++++k++w++
  Itr_sc000038.1_g00001.1  69 GGFSEEEDSIICSLFISIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111
                              569******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129421.487966IPR017930Myb domain
SuperFamilySSF466893.47E-2611109IPR009057Homeodomain-like
SMARTSM007173.1E-131364IPR001005SANT/Myb domain
PfamPF002499.3E-161462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-241569IPR009057Homeodomain-like
CDDcd001672.80E-101662No hitNo description
SMARTSM007179.2E-1167115IPR001005SANT/Myb domain
PROSITE profilePS5129416.28267117IPR017930Myb domain
PfamPF002491.9E-1069111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-2270117IPR009057Homeodomain-like
CDDcd001675.30E-871113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MGRAPCCDKN NVKKGPWSPE EDAKLKAYIE EHGTGGNWIA LPQKIGLKRC GKSCRLRWLN  60
YLRPNIKHGG FSEEEDSIIC SLFISIGSRW SIIAAQLPGR TDNDIKNYWN TRLKKKLFGK  120
QRRDHGGIKA GNVARQKQAE MRKAAVAAAA RENPMMMMMA PLANTNNNTP PWPELPVLDP  180
IRFAPDNQPA FNDHHSIRNL LIKLGGKFGD DNDDDFKHKN VALYPTENPP AVLLPPLYQQ  240
SPMNQISSAP TTETLNSPFS INEYNMEAEI RSFPGENCFY TDNTNIPQKM DGLEFLYDNM  300
LSNNNGRLGS SSGGAMMDWS EMMSYCSLAF APPLSSYTSS TVQPPAAQPH SAAALFDGEE  360
LISYSGTPPQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-24141177108B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00089SELEXTransfer from AT3G49690Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019174165.10.0PREDICTED: uncharacterized protein LOC109169731
TrEMBLA0A2C9U1J71e-117A0A2C9U1J7_MANES; Uncharacterized protein
STRINGcassava4.1_011054m1e-118(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49690.12e-81myb domain protein 84