PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc000037.1_g00039.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 234aa MW: 25470.2 Da PI: 9.9201 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 65.7 | 4.6e-21 | 15 | 62 | 2 | 49 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 r + +sn vtfskRr g++KKA+ELS+LC++e+a+i+fs+ k++ + Itr_sc000037.1_g00039.1 15 RMSKESNLLVTFSKRRSGLFKKASELSTLCGVEIAIIVFSPGKKVFSF 62 567889999********************************9999887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 9.4E-29 | 6 | 65 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 22.75 | 6 | 66 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 3.52E-31 | 7 | 75 | No hit | No description |
SuperFamily | SSF55455 | 1.24E-25 | 7 | 92 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.7E-17 | 8 | 28 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 5.2E-23 | 16 | 62 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.7E-17 | 28 | 43 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.7E-17 | 43 | 64 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009960 | Biological Process | endosperm development | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence Send to blast |
MARKCKGRQK IEMTRMSKES NLLVTFSKRR SGLFKKASEL STLCGVEIAI IVFSPGKKVF 60 SFGHPCVDSV VDRFLARSPP PAPPSAASNT SQLIEAHRNA SVRELNVQLM EILSQAELEK 120 KRGEELTKMR KESAGKWWWE SPVGELGLEE LEQLKVAMEE LKSGVGKQME KLVVEASNPN 180 LYFGGAAASS SSSKGLGLFD DANKGSSGLG LSVTPHHHLH GFANFGGYGG RGFF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3kov_A | 2e-16 | 7 | 96 | 1 | 86 | Myocyte-specific enhancer factor 2A |
3kov_B | 2e-16 | 7 | 96 | 1 | 86 | Myocyte-specific enhancer factor 2A |
3kov_I | 2e-16 | 7 | 96 | 1 | 86 | Myocyte-specific enhancer factor 2A |
3kov_J | 2e-16 | 7 | 96 | 1 | 86 | Myocyte-specific enhancer factor 2A |
3p57_A | 2e-16 | 7 | 96 | 1 | 86 | Myocyte-specific enhancer factor 2A |
3p57_B | 2e-16 | 7 | 96 | 1 | 86 | Myocyte-specific enhancer factor 2A |
3p57_C | 2e-16 | 7 | 96 | 1 | 86 | Myocyte-specific enhancer factor 2A |
3p57_D | 2e-16 | 7 | 96 | 1 | 86 | Myocyte-specific enhancer factor 2A |
3p57_I | 2e-16 | 7 | 96 | 1 | 86 | Myocyte-specific enhancer factor 2A |
3p57_J | 2e-16 | 7 | 96 | 1 | 86 | Myocyte-specific enhancer factor 2A |
5f28_A | 2e-16 | 7 | 96 | 2 | 87 | MEF2C |
5f28_B | 2e-16 | 7 | 96 | 2 | 87 | MEF2C |
5f28_C | 2e-16 | 7 | 96 | 2 | 87 | MEF2C |
5f28_D | 2e-16 | 7 | 96 | 2 | 87 | MEF2C |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. Required for suppression of cellularization and promotion of nuclear proliferation during early endosperm development. The FERTILIZATION-INDEPENDENT SEED (FIS) polycomb complex is required for suppression of ALG62 expression at the end of the syncytial phase of endosperm development. {ECO:0000269|PubMed:18334668}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019169980.1 | 1e-127 | PREDICTED: agamous-like MADS-box protein AGL62 | ||||
Swissprot | Q9FKK2 | 3e-63 | AGL62_ARATH; Agamous-like MADS-box protein AGL62 | ||||
TrEMBL | A0A2N9GC17 | 3e-88 | A0A2N9GC17_FAGSY; Uncharacterized protein | ||||
STRING | XP_006487058.1 | 7e-87 | (Citrus sinensis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA204 | 24 | 223 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 9e-56 | AGAMOUS-like 62 |
Publications ? help Back to Top | |||
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