PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000036.1_g00037.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family GRAS
Protein Properties Length: 579aa    MW: 64322.8 Da    PI: 7.1255
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000036.1_g00037.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS410.41.7e-1252105782373
                     GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsev 87 
                              ++lL++cA+a+ ++++ + ++l+++ +  +s +gdp+qRl ay+ e+L a+   s+ + y+ l+ +e +    ++ l+++++++e+
  Itr_sc000036.1_g00037.1 210 KQLLISCARALLAENKDNFDRLVEEARVSVSITGDPIQRLGAYMIEGLVAKKEASGASFYRGLKGKEPA---GKDLLSYMHILYEL 292
                              799*****************************************************************9...9************* PP

                     GRAS  88 sPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAee 171
                              +P+lkf++++aN aI +a  +e+r+HiiDf+i+qG+QW++LlqaLa+Rp+g+p++RiTg+++p s+  + + l ++g++La + e+
  Itr_sc000036.1_g00037.1 293 CPYLKFGYMAANGAIADACRNEDRIHIIDFQIGQGTQWMTLLQALAARPSGAPHVRITGIDDPVSQyaRGDGLAAVGKQLAAISEK 378
                              ***************************************************************999999***************** PP

                     GRAS 172 lgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerf 257
                              + +p+ef++ v     +++ ++L+++pgE+laVn+ +qlh+++des +++++rd +L++vkslsPkvv++veqe+++n+++F+ rf
  Itr_sc000036.1_g00037.1 379 FSIPVEFHA-VPVFAPKVTRDMLDIRPGESLAVNFPFQLHHTPDESIDMNNPRDGLLRFVKSLSPKVVTLVEQESNTNTAPFFPRF 463
                              *********.6888999********************************************************************* PP

                     GRAS 258 lealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrk 343
                              le+l+yysa+f+s++++l+r+++eri+vE+++l+r+ivnv+aceg+er+ rhe l+kW++r+++aGF+++pls+++++ +k+ll+ 
  Itr_sc000036.1_g00037.1 464 LETLDYYSAIFESIDVTLARDKKERINVEQHCLARDIVNVIACEGQERVVRHELLGKWKSRFTMAGFREYPLSSYVNSVIKSLLKY 549
                              ************************************************************************************99 PP

                     GRAS 344 vksdgyrveeesgslvlgWkdrpLvsvSaW 373
                              ++ + y++ e++g+++lgWk+r+L+s+SaW
  Itr_sc000036.1_g00037.1 550 YS-EHYTLVEKDGAMLLGWKQRNLISASAW 578
                              99.66************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098562.887183560IPR005202Transcription factor GRAS
PfamPF035146.0E-123210578IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 579 aa     Download sequence    Send to blast
MDSHQFFGYG VTGADFAYSS YPDIPSIPIR HIGSLKFDSR TSPNSPFAPH FDPQTPTSLS  60
DSQEQQSSTD NLSGVSASSN SLLDYSSYFQ QRSSPLDCGP ESLLIPSGAT SFHRNQKAKH  120
VFWQVEPALI VPDQTGAKTS DLSLSENKHQ QPLGQKSRSW SQEGQISGLI EFQPSRVSSI  180
GKPDGSVHSL KRYKTVQDFP LQGVPQGNIK QLLISCARAL LAENKDNFDR LVEEARVSVS  240
ITGDPIQRLG AYMIEGLVAK KEASGASFYR GLKGKEPAGK DLLSYMHILY ELCPYLKFGY  300
MAANGAIADA CRNEDRIHII DFQIGQGTQW MTLLQALAAR PSGAPHVRIT GIDDPVSQYA  360
RGDGLAAVGK QLAAISEKFS IPVEFHAVPV FAPKVTRDML DIRPGESLAV NFPFQLHHTP  420
DESIDMNNPR DGLLRFVKSL SPKVVTLVEQ ESNTNTAPFF PRFLETLDYY SAIFESIDVT  480
LARDKKERIN VEQHCLARDI VNVIACEGQE RVVRHELLGK WKSRFTMAGF REYPLSSYVN  540
SVIKSLLKYY SEHYTLVEKD GAMLLGWKQR NLISASAWH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A3e-582095794375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019183398.10.0PREDICTED: chitin-inducible gibberellin-responsive protein 1-like
RefseqXP_019183399.10.0PREDICTED: chitin-inducible gibberellin-responsive protein 1-like
RefseqXP_019183400.10.0PREDICTED: chitin-inducible gibberellin-responsive protein 1-like
SwissprotQ69VG10.0CIGR1_ORYSJ; Chitin-inducible gibberellin-responsive protein 1
TrEMBLA0A1S3ZG680.0A0A1S3ZG68_TOBAC; scarecrow-like protein 21
STRINGXP_009594671.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA34412448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.21e-173GRAS family protein
Publications ? help Back to Top
  1. Day RB, et al.
    Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells.
    Plant Mol. Biol., 2004. 54(2): p. 261-72
    [PMID:15159627]