PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000035.1_g00021.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family CO-like
Protein Properties Length: 422aa    MW: 47298.9 Da    PI: 5.2309
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000035.1_g00021.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box24.74.9e-081155240
                 zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                             e rkC+ +++  + l+C+ ++  lC  C  e H        Ht++
  Itr_sc000035.1_g00021.1 11 EDRKCDFCGSATAVLYCRADSASLCLGCDREVHATnplftkHTRS 55
                             5789*****************************667888888865 PP
2zf-B_box16.42e-055695438
                 zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38
                               C+ ++  ++++fC +    +C++C  e+H        H 
  Itr_sc000035.1_g00021.1 56 LLCDACDASPATIFCCNHAAVFCQNCDWESH-TpclsppHV 95
                             57***************************99.436666665 PP
3CCT38.54.3e-143864131643
                      CCT  16 kFeKkirYesRKavAesRpRvKGrFvkq 43 
                              k+eK+irYesRK++Ae+R R+KGrF+k 
  Itr_sc000035.1_g00021.1 386 KYEKQIRYESRKVRAETRIRIKGRFAKM 413
                              89************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003362.1E-141057IPR000315B-box-type zinc finger
PROSITE profilePS501199.8971057IPR000315B-box-type zinc finger
PfamPF006433.8E-61155IPR000315B-box-type zinc finger
CDDcd000216.40E-81357No hitNo description
PROSITE profilePS501199.5425399IPR000315B-box-type zinc finger
CDDcd000213.82E-55799No hitNo description
SMARTSM003360.395899IPR000315B-box-type zinc finger
PfamPF062032.5E-12349413IPR010402CCT domain
PROSITE profilePS510179.554371413IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 422 aa     Download sequence    Send to blast
MTELKEEQDA EDRKCDFCGS ATAVLYCRAD SASLCLGCDR EVHATNPLFT KHTRSLLCDA  60
CDASPATIFC CNHAAVFCQN CDWESHTPCL SPPHVRRPLE GFSGCPSVAE LLAVFGFQDV  120
GKKALLQDDH YGAGAGDDDD GISDYLVWDT PAVVSLDDLI APSDSKPSFQ AMGVPPLPKL  180
VLRIEIWNNI VDDRPCLNRN AACGQHKEEI LAQLRKMSKL EPDICADQEE FEPVMGIQAM  240
ENELNDFFGE KNSGFKQNME STLVPYSETT GFQWYNDVGE FADQGFGPTL LQGFNETTCL  300
VPDKDSDVGD SSGAANNHNE GQSNHSSHTE TFQVPPPIVA PRELNSRERE TAISRYKEKK  360
KTRRYVCILA HLSWRLAHST LHYRDKYEKQ IRYESRKVRA ETRIRIKGRF AKMDRRDSGT  420
TR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019197421.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 13
TrEMBLA0A328DCM91e-172A0A328DCM9_9ASTE; Uncharacterized protein
STRINGPGSC0003DMT4000295911e-154(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA73622228
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47890.15e-77B-box type zinc finger protein with CCT domain