PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000034.1_g00054.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family GRAS
Protein Properties Length: 809aa    MW: 89834.5 Da    PI: 5.0403
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000034.1_g00054.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS376.82.6e-1154368061374
                     GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfse 86 
                              l++lL+ cA+av+++d + a+++L+++++++s++gd mqR+a+yf+ +L+ar+a+s++++ykal + +ts    +++l+a++l+  
  Itr_sc000034.1_g00054.1 436 LRTLLTLCAQAVAADDRRTAHEFLKQIRQHSSQTGDGMQRVAHYFADGLEARMAGSGTQIYKALITMPTS---AADVLKAYQLYLA 518
                              5789************************************************************999999...9************ PP

                     GRAS  87 vsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAe 170
                              ++P+ k+s++  N++I++ ++ ++ vHiiDf+i +G+QWp+++q L++Rp+gpp+lRiTg++ p++g   +e++eetg+rLa++Ae
  Itr_sc000034.1_g00054.1 519 ACPFRKISNFFSNKTIMNVAKDATSVHIIDFGILYGFQWPCFIQRLSCRPGGPPKLRITGIDFPQPGfrPAERVEETGRRLANYAE 604
                              ******************************************************************9******************* PP

                     GRAS 171 elgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFler 256
                              +++vpfefn+ +a+++e++++e+L ++ +E+l+Vn+ ++  +llde+v ++s+rd vL+l+++l+P v++    + ++n++ F  r
  Itr_sc000034.1_g00054.1 605 RFNVPFEFNA-IAQKWETVKIEDLGINGDEVLVVNCLYRFRNLLDETVVVDSPRDIVLSLIRKLNPAVFITGCVNGSYNAPFFISR 689
                              **********.7************************************************************************** PP

                     GRAS 257 flealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllr 342
                              f eal +ys+lfd+lea++pre +er+ +E+ ++gre++nv+acegaer+er e +++ + r ++aGF+++pl++++++  +  ++
  Itr_sc000034.1_g00054.1 690 FREALFHYSSLFDMLEANIPREIHERMLLEKTIFGREAMNVIACEGAERIERPEIYRQCQVRHMRAGFRQLPLNDEIMQMSRDRVK 775
                              ************************************************************************************** PP

                     GRAS 343 kvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                               +++d + ++++ ++l++gWk+r ++++S W+
  Itr_sc000034.1_g00054.1 776 AYHKD-FIIDQDGKWLLQGWKGRVIYALSTWK 806
                              ***77.*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098566.224410787IPR005202Transcription factor GRAS
PfamPF035149.2E-113436806IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 809 aa     Download sequence    Send to blast
MVMDRNFGDF YQDTFGGKSG DESLQFFLDQ EAISGLSVND PYMDVNVGKN SKDGGESNVL  60
DPNLVSNGSV GETVVGQNEI TKNVDAVTPP SFPNPNSNNG LRVGDDSLED RGQLAFPPLQ  120
SDPGLDVVAP SSEGDGNEDY DFSDVVLKYI SQMLMEEEMG EKACMFQESA ALQAAEKSLY  180
EVIGEEYPPN SLDQNGNNGD GNNGDSGLVY PNWDPDPSES ENSTGQHAPV GVTLRTNSQS  240
SYSSSSSSGT VNDGHLDSPV STLRIPDVHV DSPLSTLRIP EIFNSTESIM QFKKGVEEAS  300
KFLPNANSFF VDVGYSGLGK GQSTDGKDMA VKGKKNNENQ LSREGSRRKK NPHYEDEDLD  360
EGRSHKQSAV SSESTVKLEM FDRVLLCSGG KNESALRQSW QNVSSKNAMD NDLPKGSNGK  420
KSRGKKQGGK SEVVDLRTLL TLCAQAVAAD DRRTAHEFLK QIRQHSSQTG DGMQRVAHYF  480
ADGLEARMAG SGTQIYKALI TMPTSAADVL KAYQLYLAAC PFRKISNFFS NKTIMNVAKD  540
ATSVHIIDFG ILYGFQWPCF IQRLSCRPGG PPKLRITGID FPQPGFRPAE RVEETGRRLA  600
NYAERFNVPF EFNAIAQKWE TVKIEDLGIN GDEVLVVNCL YRFRNLLDET VVVDSPRDIV  660
LSLIRKLNPA VFITGCVNGS YNAPFFISRF REALFHYSSL FDMLEANIPR EIHERMLLEK  720
TIFGREAMNV IACEGAERIE RPEIYRQCQV RHMRAGFRQL PLNDEIMQMS RDRVKAYHKD  780
FIIDQDGKWL LQGWKGRVIY ALSTWKAAY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A3e-494198051377Protein SCARECROW
5b3h_D3e-494198051377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019192198.10.0PREDICTED: scarecrow-like protein 33
SwissprotQ9XE580.0SCL14_ARATH; Scarecrow-like protein 14
TrEMBLA0A1J6KJ680.0A0A1J6KJ68_NICAT; Scarecrow-like protein 14
STRINGXP_009611175.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA27624191
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.10.0SCARECROW-like 14
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]