PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc000034.1_g00044.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | LBD | ||||||||
Protein Properties | Length: 210aa MW: 23811.8 Da PI: 4.0373 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 116.4 | 1.7e-36 | 7 | 105 | 1 | 98 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 +C aCk+lrr+C+++Cv+apyf +q +++fa+vhk+FGasnv+kll +lp + r++a+ ++ yeA ar++dP+yG+v+ i++l+q Itr_sc000034.1_g00044.1 7 SCGACKFLRRRCSNECVFAPYFFYDQaASHFAAVHKVFGASNVSKLLLHLPVDSRSEAAITISYEAMARMQDPIYGCVAQIFALEQ 92 6*********************999978********************************************************** PP DUF260 86 qleqlkaelallk 98 ++++l +e++ ++ Itr_sc000034.1_g00044.1 93 EVASLMEEIENIE 105 *******998765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 21.95 | 6 | 108 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 7.3E-35 | 7 | 104 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 210 aa Download sequence Send to blast |
MTGLGSSCGA CKFLRRRCSN ECVFAPYFFY DQAASHFAAV HKVFGASNVS KLLLHLPVDS 60 RSEAAITISY EAMARMQDPI YGCVAQIFAL EQEVASLMEE IENIEKLMAY CACEGPEQQC 120 MVNDELLFFS EYNNMSINMN HNVTVPFLED SYANSTPYSQ MNMQNPPVNG WEDEIFFPFS 180 DSDISDIFNE TIDPNIYLQY QLVDNGNIYH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 9e-31 | 3 | 113 | 7 | 116 | LOB family transfactor Ramosa2.1 |
5ly0_B | 9e-31 | 3 | 113 | 7 | 116 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019192293.1 | 1e-154 | PREDICTED: LOB domain-containing protein 33-like | ||||
TrEMBL | A0A1S4BHD4 | 1e-67 | A0A1S4BHD4_TOBAC; LOB domain-containing protein 33-like | ||||
TrEMBL | A0A1U7UT89 | 1e-67 | A0A1U7UT89_NICSY; LOB domain-containing protein 33-like | ||||
STRING | XP_009757428.1 | 2e-68 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12769 | 15 | 21 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06080.1 | 6e-53 | LOB domain-containing protein 33 |