PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc000034.1_g00003.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | MYB | ||||||||
Protein Properties | Length: 269aa MW: 30491.6 Da PI: 9.4468 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 26.7 | 1.3e-08 | 20 | 65 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46 rWT+eE +l+ a ++ + +W ++a +++ g++ +++ + + Itr_sc000034.1_g00003.1 20 RWTKEENKLFESALAMIDERipdRWFKVADMIP-GKSVYDVLNQYKE 65 9********************************.*******999875 PP | |||||||
2 | Myb_DNA-binding | 41.9 | 2.4e-13 | 117 | 161 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ +++ + +++G+g+W+ I+r + +t+ q+ s+ qky Itr_sc000034.1_g00003.1 117 PWTEEEHRRFLMGLQKYGKGDWRNISRNFVISKTPTQVASHAQKY 161 8*****************************789***********9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 7.54 | 16 | 70 | IPR017884 | SANT domain |
SMART | SM00717 | 6.4E-7 | 17 | 69 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 8.61E-11 | 19 | 74 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.66E-6 | 20 | 67 | No hit | No description |
Pfam | PF00249 | 1.4E-6 | 20 | 65 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 19.918 | 110 | 166 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 7.9E-17 | 112 | 166 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.5E-19 | 113 | 165 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 6.4E-12 | 114 | 160 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.3E-11 | 114 | 164 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 8.17E-10 | 117 | 162 | No hit | No description |
Pfam | PF00249 | 1.8E-11 | 117 | 161 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 269 aa Download sequence Send to blast |
MESLLISSPS WLIHQSKSTR WTKEENKLFE SALAMIDERI PDRWFKVADM IPGKSVYDVL 60 NQYKELVADV SNIEAGLVPI PGYLASPFAL QLVDDRGFEV HRKRGRSCDH ERKKGVPWTE 120 EEHRRFLMGL QKYGKGDWRN ISRNFVISKT PTQVASHAQK YFLRQHSGGK DKRRPSIHDI 180 TTVNVSDANL VASDTKHSLL DEKSQDVPVL VSRSASVPEM LGWNFPDDGA LMASVFSSPQ 240 GSQFVSYPSE IAYAKLGFQI PPTRYQIRG |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 101 | 113 | RKRGRSCDHERKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019191872.1 | 0.0 | PREDICTED: transcription factor DIVARICATA-like | ||||
Swissprot | Q8S9H7 | 5e-83 | DIV_ANTMA; Transcription factor DIVARICATA | ||||
TrEMBL | A0A2N9H1W5 | 1e-106 | A0A2N9H1W5_FAGSY; Uncharacterized protein | ||||
STRING | EMJ20461 | 1e-103 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA458 | 24 | 140 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38090.1 | 3e-84 | MYB family protein |
Publications ? help Back to Top | |||
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