PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc000033.1_g00046.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | Nin-like | ||||||||
Protein Properties | Length: 327aa MW: 36168.5 Da PI: 5.2154 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 79.3 | 4.1e-25 | 206 | 253 | 5 | 52 |
RWP-RK 5 isledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +s +++s+yF++pi++AAkeL+v+lT LK++CR +GI+RWPhRk++sl Itr_sc000033.1_g00046.1 206 LSKKTISNYFYMPINQAAKELNVGLTQLKKRCRMLGIRRWPHRKLNSL 253 7899******************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 15.96 | 182 | 275 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 1.3E-21 | 206 | 253 | IPR003035 | RWP-RK domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 327 aa Download sequence Send to blast |
MVMAFSNMGT HSFSLEKHWS GFGPAENNVF SFPIPPPPPQ ANGGHFRLYL EDYAWDPQLS 60 DFCIEDNSCD SSSLMEMFLN DPLLSTLDME PELLPLTTQG DDNGGAGNER VSCGFSIGDG 120 QIQTYQNQFL GSVEIATSNS NSSHDNGGGS GIFTGAENER VSCGFSIGDG QIQTYENHHF 180 VGSLGTANSS HDDNGGGGGC KSALMLSKKT ISNYFYMPIN QAAKELNVGL TQLKKRCRML 240 GIRRWPHRKL NSLQTLINNV QKIGNSEGVV MAREAIELLE REKKQVEEIP DVELEDTTKR 300 LRQACFKANY KKRRLLEIQQ SFLVQQP |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4274 | 21 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G18790.1 | 4e-46 | RWP-RK domain-containing protein |