PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000033.1_g00046.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family Nin-like
Protein Properties Length: 327aa    MW: 36168.5 Da    PI: 5.2154
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000033.1_g00046.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK79.34.1e-25206253552
                   RWP-RK   5 isledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                              +s +++s+yF++pi++AAkeL+v+lT LK++CR +GI+RWPhRk++sl
  Itr_sc000033.1_g00046.1 206 LSKKTISNYFYMPINQAAKELNVGLTQLKKRCRMLGIRRWPHRKLNSL 253
                              7899******************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151915.96182275IPR003035RWP-RK domain
PfamPF020421.3E-21206253IPR003035RWP-RK domain
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MVMAFSNMGT HSFSLEKHWS GFGPAENNVF SFPIPPPPPQ ANGGHFRLYL EDYAWDPQLS  60
DFCIEDNSCD SSSLMEMFLN DPLLSTLDME PELLPLTTQG DDNGGAGNER VSCGFSIGDG  120
QIQTYQNQFL GSVEIATSNS NSSHDNGGGS GIFTGAENER VSCGFSIGDG QIQTYENHHF  180
VGSLGTANSS HDDNGGGGGC KSALMLSKKT ISNYFYMPIN QAAKELNVGL TQLKKRCRML  240
GIRRWPHRKL NSLQTLINNV QKIGNSEGVV MAREAIELLE REKKQVEEIP DVELEDTTKR  300
LRQACFKANY KKRRLLEIQQ SFLVQQP
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA42742142
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18790.14e-46RWP-RK domain-containing protein