PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000033.1_g00037.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

NAC

Protein Properties

Length: 331aa MW: 37368.2 Da PI: 6.7785

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000033.1_g00037.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	172.4	1.4e-53	13	139	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 lppGfrFhPtdeel+++yL kk+ ++++ + +i evd++kvePw+Lp k + +ekewyfF+ rdkky+tg r+nrat+sgyWkat Itr_sc000033.1_g00037.1 13 LPPGFRFHPTDEELITHYLSKKALDTSFCA-VAIGEVDMNKVEPWELPWKSRIGEKEWYFFCVRDKKYPTGMRTNRATASGYWKAT 97 79***********************888.67***********888889**************************** PP NAM 87 gkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 gkdke+++ ++ lvg+kktLvfy+grapkgekt+Wv he+rle Itr_sc000033.1_g00037.1 98 GKDKEIFR-GKCLVGMKKTLVFYQGRAPKGEKTNWVCHEFRLE 139 ****.999**************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.92E-61	9	164	IPR003441	NAC domain
PROSITE profile	PS51005	57.136	13	163	IPR003441	NAC domain
Pfam	PF02365	2.5E-27	14	138	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 331 aa Download sequence Send to blast
MENLPGDDNQ MDLPPGFRFH PTDEELITHY LSKKALDTSF CAVAIGEVDM NKVEPWELPW 60 KSRIGEKEWY FFCVRDKKYP TGMRTNRATA SGYWKATGKD KEIFRGKCLV GMKKTLVFYQ 120 GRAPKGEKTN WVCHEFRLEG KLSVHNFPNA AQSDWVICRV FHKNSCGKNV HFPDTKSSVL 180 PPLTDSSTTT TTPPESGHVH CFSSLIPPEN KSLQQESMNM VNYLSNINPP LPSSSTADIS 240 PHPQTVFPWS QAVQTHGSTF LQNQDSFPIQ DPAILTSLLA GCGHRSFKTE KEMVCGSQET 300 EISSVVSNLE MGRRAFDDHQ NPQELDCLWS Y

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	8e-54	10	169	14	171	NO APICAL MERISTEM PROTEIN
1ut4_B	8e-54	10	169	14	171	NO APICAL MERISTEM PROTEIN
1ut7_A	8e-54	10	169	14	171	NO APICAL MERISTEM PROTEIN
1ut7_B	8e-54	10	169	14	171	NO APICAL MERISTEM PROTEIN
3swm_A	1e-53	10	169	17	174	NAC domain-containing protein 19
3swm_B	1e-53	10	169	17	174	NAC domain-containing protein 19
3swm_C	1e-53	10	169	17	174	NAC domain-containing protein 19
3swm_D	1e-53	10	169	17	174	NAC domain-containing protein 19
3swp_A	1e-53	10	169	17	174	NAC domain-containing protein 19
3swp_B	1e-53	10	169	17	174	NAC domain-containing protein 19
3swp_C	1e-53	10	169	17	174	NAC domain-containing protein 19
3swp_D	1e-53	10	169	17	174	NAC domain-containing protein 19
4dul_A	8e-54	10	169	14	171	NAC domain-containing protein 19
4dul_B	8e-54	10	169	14	171	NAC domain-containing protein 19
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00496	DAP	Transfer from AT5G07680	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed post-transcriptionally by miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808, ECO:0000269\|PubMed:18305205, ECO:0000305\|PubMed:15723790}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019152302.1	0.0	PREDICTED: NAC domain-containing protein 92-like
Swissprot	Q9FLR3	1e-108	NAC79_ARATH; NAC domain-containing protein 79
TrEMBL	A0A068UVF5	1e-128	A0A068UVF5_COFCA; Uncharacterized protein
STRING	XP_009587074.1	1e-128	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA152	24	279

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G07680.1	1e-102	NAC domain containing protein 80

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Vidal EA,Álvarez JM,Gutiérrez RA Nitrate regulation of AFB3 and NAC4 gene expression in Arabidopsis roots depends on NRT1.1 nitrate transport function. Plant Signal Behav, 2014. 9(3): p. e28501 [PMID:24642706] Lee MH,Jeon HS,Kim HG,Park OK An Arabidopsis NAC transcription factor NAC4 promotes pathogen-induced cell death under negative regulation by microRNA164. New Phytol., 2017. 214(1): p. 343-360 [PMID:28032643]