PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000033.1_g00021.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family C2H2
Protein Properties Length: 509aa    MW: 56008.2 Da    PI: 8.4912
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000033.1_g00021.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2157.1e-0589108221
                              EETTTTEEESSHHHHHHHHH CS
                  zf-C2H2   2 kCpdCgksFsrksnLkrHir 21 
                              +C+ Cgk F+++  L  H++
  Itr_sc000033.1_g00021.1  89 VCKECGKGFPSWKALFGHMK 108
                              6******************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.19E-8729No hitNo description
PROSITE profilePS501579.037729IPR007087Zinc finger, C2H2
PfamPF139121.4E-5730IPR007087Zinc finger, C2H2
SMARTSM003551729IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280929IPR007087Zinc finger, C2H2
SuperFamilySSF576674.19E-883110No hitNo description
PROSITE profilePS501579.88988115IPR007087Zinc finger, C2H2
SMARTSM003550.005788110IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028090110IPR007087Zinc finger, C2H2
PfamPF139124.1E-890112IPR007087Zinc finger, C2H2
SuperFamilySSF576672.57E-5346374No hitNo description
PfamPF139122.5E-12347372IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.907348375IPR007087Zinc finger, C2H2
SMARTSM003550.057348370IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280350370IPR007087Zinc finger, C2H2
PfamPF139121.4E-10416440IPR007087Zinc finger, C2H2
PROSITE profilePS501578.787417439IPR007087Zinc finger, C2H2
SMARTSM003550.19417439IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280419439IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 509 aa     Download sequence    Send to blast
MLQKQKHFCK LCSRSFPCGR SLGGHMRSHL IGNSSENPER SRNSGSGIDG SVHTSYILRE  60
NPRKTCKFAA ESSGGGGEDA LLQRQNDKVC KECGKGFPSW KALFGHMKCH SEKITMISTN  120
NSKSKMEEAA DSWNVVADNS CHSDDSEAAN KNNNAPNRKK RSRSRRVTAT TKRYQVVNAA  180
TTNSSTLTAA NSASPCVSEN AVEHEHEEVA MSLIMLSRDV GSWGGLASVT ECSDNNSEFL  240
GIRSSANSEI KAKKVGSDEK LKKPKSRGSG IPISGGNNNK MKVSEADRYK DCNLVIDRAG  300
FEKSEVDVPS NAQGSSDKRK QKRIERDDEF DQNEVWFSSL DSEKKIRFEC STCNKSFHSY  360
QALGGHRASH KKAKDGSDKN TDHFSAAADS SEQHSILGFA DKVVESSSKK IKVAAHHECP  420
ICFKIFPSGQ ALGGHKRSHL IAEAKANQQP TQIIQKPSSV PETRDFLDLN LPAPIEEEED  480
KESHQSSGFQ PWWIVGSSYN HEHLVQPTF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1159164KRSRSR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019152366.10.0PREDICTED: zinc finger protein ZAT1-like
TrEMBLA0A1S3XFD41e-119A0A1S3XFD4_TOBAC; zinc finger protein ZAT9-like
STRINGXP_009623743.11e-120(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA44812241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.12e-26C2H2-like zinc finger protein