PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000033.1_g00020.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

MYB_related

Protein Properties

Length: 528aa MW: 58974.5 Da PI: 4.2976

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000033.1_g00020.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	25.3	3.5e-08	271	319	2	47
SSS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrwqky 47 +rW++eE+el+ d v + W+ +++++ Rt kq++s+++++ Itr_sc000033.1_g00020.1 271 LRWSEEEQELFHDIVFSNPASvgknFWNHLSAEFP-SRTMKQIVSYYFNV 319 69***********9988778888******.*********996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	0.0018	269	322	IPR001005	SANT/Myb domain
Pfam	PF00249	2.0E-6	272	319	IPR001005	SANT/Myb domain
CDD	cd00167	9.20E-8	272	320	No hit	No description
Gene3D	G3DSA:1.10.10.60	2.2E-4	272	318	IPR009057	Homeodomain-like
PROSITE profile	PS50090	5.993	272	320	IPR017877	Myb-like domain
SuperFamily	SSF46689	2.09E-5	272	321	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 528 aa Download sequence Send to blast
MVQKRPFDQE LQELSSKQPR HVEPSDQLAS LGVSQEPIAL KSHSSGEGED TPLKSQFTRE 60 EKFDSACAAD VRSSERDIEP GIPGSASNSS WATSSTSEED VKSEGPYHIL VSPEHYNLDL 120 PSFRNVSRSK LIYSSLMRSP PRKLVPIGPD YQADLPDFVG HEKKKTCYLE ETCKADITSQ 180 ALESDSNGDL NDDDRLAGTS IIPMPKLESS GYNDESVGTG SGSGDCLCED AGSIRCTRQH 240 VFEAREKLKT VLGEETFVKL GFYDIGEVVA LRWSEEEQEL FHDIVFSNPA SVGKNFWNHL 300 SAEFPSRTMK QIVSYYFNVF MLRRRAEQNR FDPLNVDSDN DEWQAPEESS GDEAKMTDED 360 EDSVVESPVY LDDYGRNEIY RYDDIGLPVW EEYKDISNET NKAVNYESVG CADKAFEKCS 420 SEPTARNEDR DFPNGFGDEN GNCTTVTPKA PHVKSDIGKD WSRSFVGMGS DNGHDFVLEP 480 CSGKEWDVGF FSCPKSKVDL LPTCTMIEEV FGDKDWNYSS RGDGHGSS

Sequence ? help Back to Top

Protein Sequence Length: 528 aa Download sequence Send to blast

MVQKRPFDQE LQELSSKQPR HVEPSDQLAS LGVSQEPIAL KSHSSGEGED TPLKSQFTRE  60
EKFDSACAAD VRSSERDIEP GIPGSASNSS WATSSTSEED VKSEGPYHIL VSPEHYNLDL  120
PSFRNVSRSK LIYSSLMRSP PRKLVPIGPD YQADLPDFVG HEKKKTCYLE ETCKADITSQ  180
ALESDSNGDL NDDDRLAGTS IIPMPKLESS GYNDESVGTG SGSGDCLCED AGSIRCTRQH  240
VFEAREKLKT VLGEETFVKL GFYDIGEVVA LRWSEEEQEL FHDIVFSNPA SVGKNFWNHL  300
SAEFPSRTMK QIVSYYFNVF MLRRRAEQNR FDPLNVDSDN DEWQAPEESS GDEAKMTDED  360
EDSVVESPVY LDDYGRNEIY RYDDIGLPVW EEYKDISNET NKAVNYESVG CADKAFEKCS  420
SEPTARNEDR DFPNGFGDEN GNCTTVTPKA PHVKSDIGKD WSRSFVGMGS DNGHDFVLEP  480
CSGKEWDVGF FSCPKSKVDL LPTCTMIEEV FGDKDWNYSS RGDGHGSS

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019153233.1	0.0	PREDICTED: uncharacterized protein LOC109149738
TrEMBL	A0A328D9N9	0.0	A0A328D9N9_9ASTE; Uncharacterized protein
TrEMBL	A0A484MDP2	0.0	A0A484MDP2_9ASTE; Uncharacterized protein
STRING	XP_009789735.1	1e-170	(Nicotiana sylvestris)
STRING	PGSC0003DMT400083168	1e-170	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1514	16	25