PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc000032.1_g00023.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | ERF | ||||||||
Protein Properties | Length: 138aa MW: 15131.8 Da PI: 6.5197 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 48.1 | 2.9e-15 | 21 | 71 | 3 | 56 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 y+GVr+++ +g++ AeI+d +g r +lg+f++aeeAa+a+++a+ l+g+ Itr_sc000032.1_g00023.1 21 YHGVRRRP-WGKFGAEIKDSALDG--GRQWLGTFDSAEEAARAYDRAAFGLRGH 71 89******.**********43354..899********************99996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 21.232 | 20 | 78 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.3E-21 | 20 | 79 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.7E-29 | 20 | 84 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.0E-9 | 21 | 32 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 6.6E-10 | 21 | 71 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 5.54E-26 | 21 | 79 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 5.7E-27 | 21 | 79 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.0E-9 | 44 | 60 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 138 aa Download sequence Send to blast |
MEGTSSNNKG KAQQQKEEVM YHGVRRRPWG KFGAEIKDSA LDGGRQWLGT FDSAEEAARA 60 YDRAAFGLRG HLATLNFPHC YYHPSSASTP PPAAAAAADS SSVPAPAGKE VFEIEYFDDS 120 LLEQLLGEED QKKKRKLS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 7e-29 | 21 | 121 | 15 | 114 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 131 | 136 | KKKRKL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019180340.1 | 4e-65 | PREDICTED: ethylene-responsive transcription factor ERF098-like | ||||
Refseq | XP_019180341.1 | 4e-65 | PREDICTED: ethylene-responsive transcription factor ERF098-like | ||||
Swissprot | Q9LTC5 | 7e-38 | ERF98_ARATH; Ethylene-responsive transcription factor ERF098 | ||||
TrEMBL | A0A1S3XM45 | 5e-46 | A0A1S3XM45_TOBAC; ethylene-responsive transcription factor ERF098-like | ||||
STRING | XP_009780511.1 | 1e-46 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23230.1 | 1e-26 | ERF family protein |
Publications ? help Back to Top | |||
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