PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000024.1_g00040.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family bZIP
Protein Properties Length: 421aa    MW: 45171.2 Da    PI: 7.4189
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000024.1_g00040.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_167.62.1e-21278340163
                              XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                   bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                              e+elkre+rkq+NRe+ArrsR+RK+ae+eeL+++v++L++eN  Lk+e+++l+++++klk e+
  Itr_sc000024.1_g00040.1 278 ERELKREKRKQSNRESARRSRLRKQAETEELAKRVQSLTSENINLKSEINKLTENSEKLKLEN 340
                              89**********************************************************886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077772.2E-33193IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165963.6E-25131259No hitNo description
Gene3DG3DSA:1.20.5.1703.8E-17272337No hitNo description
SMARTSM003381.2E-18278342IPR004827Basic-leucine zipper domain
PfamPF001708.6E-20278340IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.07280343IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.25E-10281337No hitNo description
CDDcd147028.40E-21283331No hitNo description
PROSITE patternPS000360285300IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009737Biological Processresponse to abscisic acid
GO:0005829Cellular Componentcytosol
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 421 aa     Download sequence    Send to blast
MGNSEEGKSS KPEKSSSTTP DQGNAQMYLD WAAIQAYYGP RVAIPPYFNS VVPPGHAPHP  60
YMWGPPQPMM PPYGAPYAAI YAHGGVYAHP GVPIGSHSHG HEIPPSGAIN EATAAASMGT  120
DTSGKSSGNA DRGLMSKLKG FDGLGMSIGN GNSDGGKGGT DHTHSQSMET EGSSDGSNAD  180
TVGENSKKRS RETTPTNADK TTNGYPTSVG EFNGASKKLT PMTIPPILPG QVMGTVVSPN  240
MTTSLDLRSP PSANLKASPT NVPQLSPPMP TETWAQNERE LKREKRKQSN RESARRSRLR  300
KQAETEELAK RVQSLTSENI NLKSEINKLT ENSEKLKLEN VALMERLKAE KLGQMEEISL  360
GKIDEKRLQP VATADLLARV NNSDSVDRNG EEGEVYDSNN SRTKLHQLLD ASPRTDAVAA  420
R
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1294300RRSRLRK
2294301RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box-like motif (5'-ACGTGGC-3') of the chalcone synthase (CHS) gene promoter. G-box and G-box-like motifs are defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00318DAPTransfer from AT2G46270Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019190953.10.0PREDICTED: transcriptional activator TAF-1-like isoform X2
SwissprotQ990891e-137CPRF1_PETCR; Common plant regulatory factor 1
TrEMBLA0A328E9C90.0A0A328E9C9_9ASTE; Uncharacterized protein
TrEMBLA0A484LZS10.0A0A484LZS1_9ASTE; Uncharacterized protein
STRINGXP_009765847.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31132447
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46270.16e-81G-box binding factor 3
Publications ? help Back to Top
  1. Weisshaar B,Armstrong GA,Block A,da Costa e Silva O,Hahlbrock K
    Light-inducible and constitutively expressed DNA-binding proteins recognizing a plant promoter element with functional relevance in light responsiveness.
    EMBO J., 1991. 10(7): p. 1777-86
    [PMID:2050115]
  2. Feldbrügge M,Hahlbrock K,Weisshaar B
    The transcriptional regulator CPRF1: expression analysis and gene structure.
    Mol. Gen. Genet., 1996. 251(6): p. 619-27
    [PMID:8757392]