PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000023.1_g00005.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family NAC
Protein Properties Length: 639aa    MW: 70282.7 Da    PI: 4.7718
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000023.1_g00005.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM161.53.3e-50201731128
                      NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk...........................kvkaeekewy 59 
                              lp+GfrFhPtdeelv++yLk k++g+k+ + +vi+e+di+k+ePwdLp+                           ++k+ ++ew+
  Itr_sc000023.1_g00005.1  20 LPVGFRFHPTDEELVDHYLKLKINGSKTLA-SVIREIDICKLEPWDLPEgdigigwvsgvfkplavsikastlylsMIKSYDNEWF 104
                              79*************************766.89***************669*****************999999988888999*** PP

                      NAM  60 fFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                              fF++ d+ky++g+r nrat++gyWkatgkd+++l+kk+ ++g+kktLv+y+grap+g++++Wv+heyr+
  Itr_sc000023.1_g00005.1 105 FFCPIDRKYQNGQRMNRATERGYWKATGKDRNILTKKRVKIGMKKTLVYYEGRAPDGKRSNWVIHEYRA 173
                              *******************************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.92E-491568IPR003441NAC domain
PROSITE profilePS5100549.59220220IPR003441NAC domain
PfamPF023652.4E-2621172IPR003441NAC domain
SuperFamilySSF1019413.92E-4992220IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 639 aa     Download sequence    Send to blast
MTVIPLEESP ATVLPPLNSL PVGFRFHPTD EELVDHYLKL KINGSKTLAS VIREIDICKL  60
EPWDLPEGDI GIGWVSGVFK PLAVSIKAST LYLSMIKSYD NEWFFFCPID RKYQNGQRMN  120
RATERGYWKA TGKDRNILTK KRVKIGMKKT LVYYEGRAPD GKRSNWVIHE YRATDKALDG  180
TQPGQVEISE LFPVVVKLKY MPSCLGSSAT PFVLCRLFKK NELKQDENAE SPNSNGVEPN  240
VSSPTVVKSP GEDDQLEAVT PMGRDHIKAQ ALTPEKSSVE ESPVAQLPVD NNSISSNANN  300
AEEDLDIPHD PVLDELFANL YEPSEEHLDI VSLPQTETQG LGSSYAYGAI TNNCGDDMDI  360
QSLSETSESD ATEFMNSFLV SSDEVPYGDS GQQILPIEHA TPNYVSTINK PSEAEMMQGL  420
VKTGFLENVP ANALLQRHIE HVPNPSGGVY TPHTFNGGPE MWNSDPLNNS YLGQDAFSTM  480
CDGSRATNMV NLEGEGGLVN SVSSFGPGIR LRTRQARSQA ADQPFTMQGT AHRRIRLQMS  540
LPAASVQSRL PEDSNQAESE KSAVTEGETI DSTATSSLET RDIIAREFKR DGEISKNIST  600
KTKDKGGFAA CSNGNTIFVF SKTGLLHSVY MPKEADPRN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-371917214139Stress-induced transcription factor NAC1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019200470.10.0PREDICTED: protein NTM1-like 9
TrEMBLA0A328E0U71e-169A0A328E0U7_9ASTE; Uncharacterized protein
TrEMBLA0A484L8F91e-169A0A484L8F9_9ASTE; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA33632448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35580.12e-70NAC transcription factor-like 9