PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000022.1_g00030.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family bHLH
Protein Properties Length: 463aa    MW: 48226.7 Da    PI: 5.104
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000022.1_g00030.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH15.23.9e-052943163355
                              .TTS-STCHHHHHHHHHHHHHHH CS
                      HLH  33 apskKlsKaeiLekAveYIksLq 55 
                              ++s++ +Ka++L +++eY+k+Lq
  Itr_sc000022.1_g00030.1 294 NQSERTDKASMLDEVIEYLKQLQ 316
                              5899******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.05E-4293320No hitNo description
Gene3DG3DSA:4.10.280.103.5E-6294326IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-6295336IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0009506Cellular Componentplasmodesma
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 463 aa     Download sequence    Send to blast
MSQCVPSWDV EDNSTTTVKI NGVAQSGSSS FGADVPSLDY EVAELTWENG QLAMHGLGPP  60
RVPSKLLAAA TAVKYTWDKP RAGGTLESIV SQATCMPTNR KGGDGDGGRG GPGGELVPWF  120
DHHGGGGGGG DNPAAAASVT VTMDALVPCA NNNNNTNREP PSTGRVAGFS GLVGSCSGAA  180
AAATREASLA RAAAHEWSNR GGDQMSVSGS ATYGRDSRQV TIETTYDRDL GNEAYTSASM  240
GSPENTSSDK QCTNKSNDDN DHSREIGTDE EDKKKGNGKS SVSTKRSRAA AIHNQSERTD  300
KASMLDEVIE YLKQLQAQVQ MMSRMNMSPM MFPLAMQQQL QMSMMAPAAA AAMGMNMAGM  360
GMGVMDMNSV AAAAGRSNIP GIPGLLHPAA ASAAAAAFMP MAAWWENSLD RMPNAAAAAA  420
SSMMPDPLTA FLASQSQPMT MDAYSRMAAL YQQFQQAPGG PKN
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00034PBMTransfer from AT4G00050Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019188967.10.0PREDICTED: transcription factor UNE10
TrEMBLB9RD581e-142B9RD58_RICCO; DNA binding protein, putative
STRINGXP_002511647.11e-142(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43672132
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00050.11e-57bHLH family protein