PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000022.1_g00017.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family ERF
Protein Properties Length: 273aa    MW: 29096.5 Da    PI: 7.3194
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000022.1_g00017.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.11.1e-1890140256
                      AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                               y+GVr +  +g+Wv+eIr+p++   + r++lg++ tae+Aa+a++ a+++++g+
  Itr_sc000022.1_g00017.1  90 TYRGVRKRN-WGKWVSEIREPRK---KSRIWLGTYPTAEMAARAHDVAALAIKGH 140
                              69****887.**********843...6***********************99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003805.4E-3590153IPR001471AP2/ERF domain
PROSITE profilePS5103223.6390147IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-2290148IPR016177DNA-binding domain
PfamPF008472.4E-1390140IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.1E-3290148IPR001471AP2/ERF domain
PRINTSPR003671.4E-1091102IPR001471AP2/ERF domain
CDDcd000183.21E-2991149No hitNo description
PRINTSPR003671.4E-10113129IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MGGQANEALG HDYYSATTTT TSSSSTASHS GDSGSSNSPS TTTTTTTTTS SSSSSKSSKG  60
NKGSKRGQEA KNGGGNKKRR KAEGGEKHPT YRGVRKRNWG KWVSEIREPR KKSRIWLGTY  120
PTAEMAARAH DVAALAIKGH AAYLNFPHLA DQLPRPASNS PKDIQAAAAK AAETTTFDDH  180
DEVSHGASGS IEAEPSRAKL PSSQSSSNLT SESMQESLNS PAAYGGDDDT FFDLPDLSLD  240
GANQNDRYVS TWQLVGVDPG GFRLEEPFLW ESY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-1985148973Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17680KKRRK
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00312DAPTransfer from AT2G44940Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019188875.11e-138PREDICTED: ethylene-responsive transcription factor ERF034-like
SwissprotQ8LBQ74e-68ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBLA0A1J6J5161e-92A0A1J6J516_NICAT; Ethylene-responsive transcription factor erf034
STRINGXP_009613551.14e-90(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21224225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44940.12e-58ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]