PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000022.1_g00015.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

MYB

Protein Properties

Length: 390aa MW: 43540.7 Da PI: 5.9592

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000022.1_g00015.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	41	4.5e-13	34	79	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g+W eEde l++ vk++G+++W++I ++ + R++k+c++rw + Itr_sc000022.1_g00015.1 34 KGPWKVEEDEVLLNHVKKYGPRDWSSIQSKGLLQRSGKSCRLRWVN 79 79***********************9998899********87 PP
2	Myb_DNA-binding	44.4	3.9e-14	130	170	3	45
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 ++++eE+ + +d+ +++G++ W++Ia +++ gRt++++k++w Itr_sc000022.1_g00015.1 130 KFSAEEERIVIDLQAEFGNK-WARIATYLP-GRTDNDVKNFWS 170 79****************.*****.*********6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	18.677	29	85	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	4.5E-20	30	87	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.6E-25	32	82	IPR009057	Homeodomain-like
SMART	SM00717	7.3E-11	33	83	IPR001005	SANT/Myb domain
CDD	cd00167	6.24E-11	36	81	No hit	No description
Pfam	PF13921	8.1E-12	37	87	No hit	No description
PROSITE profile	PS51294	17.697	123	177	IPR017930	Myb domain
SMART	SM00717	2.4E-12	127	175	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	1.6E-25	129	169	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.3E-16	130	171	IPR009057	Homeodomain-like
CDD	cd00167	4.88E-11	130	169	No hit	No description
Pfam	PF00249	1.8E-12	130	170	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 390 aa Download sequence Send to blast
MKGRRSSYTC SFTHHHHHHS NGDSGELTAA EMKKGPWKVE EDEVLLNHVK KYGPRDWSSI 60 QSKGLLQRSG KSCRLRWVNK LRPNLKNFHL FGGKENSVTT ENKSRPVTLI NQSELFITDQ 120 SVWFFNSGVK FSAEEERIVI DLQAEFGNKW ARIATYLPGR TDNDVKNFWS SRRKRLARIL 180 HNNNHSAASS SHSNMSPEKN SVAVEDAPAF HHASSLEAQK LSSMDDEQEA MLLSKPQSCS 240 SSSNVVGKSE EACNVVVPAM PPENIPNPFT FEPVNLFHPH LLSFPEFPQL LTDDDIALPP 300 AIETLPDGFN DNLGPLWDPS LLDMFGSSAA CDASGMGNGM QLPFPAPEGS FRREDGVKKE 360 AGTLTPESFI DDFPIDMFDH IEPLPSPSDW

Sequence ? help Back to Top

Protein Sequence Length: 390 aa Download sequence Send to blast

MKGRRSSYTC SFTHHHHHHS NGDSGELTAA EMKKGPWKVE EDEVLLNHVK KYGPRDWSSI  60
QSKGLLQRSG KSCRLRWVNK LRPNLKNFHL FGGKENSVTT ENKSRPVTLI NQSELFITDQ  120
SVWFFNSGVK FSAEEERIVI DLQAEFGNKW ARIATYLPGR TDNDVKNFWS SRRKRLARIL  180
HNNNHSAASS SHSNMSPEKN SVAVEDAPAF HHASSLEAQK LSSMDDEQEA MLLSKPQSCS  240
SSSNVVGKSE EACNVVVPAM PPENIPNPFT FEPVNLFHPH LLSFPEFPQL LTDDDIALPP  300
AIETLPDGFN DNLGPLWDPS LLDMFGSSAA CDASGMGNGM QLPFPAPEGS FRREDGVKKE  360
AGTLTPESFI DDFPIDMFDH IEPLPSPSDW

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019192169.1	0.0	PREDICTED: myb-related protein MYBAS2-like
TrEMBL	A0A068UMH9	1e-86	A0A068UMH9_COFCA; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4207	23	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60460.1	8e-61	MYB family protein