PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000021.1_g00031.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MYB_related
Protein Properties Length: 89aa    MW: 10629 Da    PI: 9.4677
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000021.1_g00031.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.18.4e-08345344
                             SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
          Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                             +WT+   +++ +a + + ++   +W++Iar++g  ++ ++++  +
  Itr_sc000021.1_g00031.1  3 SWTAKQNKKFEEALAIYDKEtpdRWHKIARYVG--KSIEEVRRQY 45
                             6*****************99************8..8999999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129310.88153IPR017884SANT domain
SMARTSM007173.4E-4151IPR001005SANT/Myb domain
SuperFamilySSF466899.28E-12356IPR009057Homeodomain-like
CDDcd001672.46E-4345No hitNo description
PfamPF002492.0E-5345IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 89 aa     Download sequence    Send to blast
MASWTAKQNK KFEEALAIYD KETPDRWHKI ARYVGKSIEE VRRQYEILEK DIMQIENDEV  60
PLPNYRATES SSRGFASNEQ RLLRNLKLR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A9e-264891193RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019174840.13e-60PREDICTED: protein RADIALIS-like 6
SwissprotQ1A1733e-30RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A1J6J2A25e-42A0A1J6J2A2_NICAT; Protein radialis-like 6
STRINGXP_009771192.11e-42(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20224231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.21e-32RAD-like 6