PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc000021.1_g00026.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | MYB_related | ||||||||
Protein Properties | Length: 87aa MW: 9902.08 Da PI: 8.8933 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 29.7 | 1.5e-09 | 6 | 51 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46 +WT+ +++ +a + + ++ +W+ ar +g g+t++++k ++ + Itr_sc000021.1_g00026.1 6 AWTAKQNKRFENALAVYDKDtpdRWRNLARAVG-GKTEEEVKRHYEM 51 8********************************.***********76 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 9.728 | 2 | 57 | IPR017884 | SANT domain |
SMART | SM00717 | 5.3E-7 | 3 | 55 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.49E-6 | 6 | 53 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.1E-5 | 6 | 59 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.5E-6 | 6 | 52 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.25E-12 | 7 | 60 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 87 aa Download sequence Send to blast |
MASSSAWTAK QNKRFENALA VYDKDTPDRW RNLARAVGGK TEEEVKRHYE MLVEDINHIE 60 SGKVPLPNYD AVKGSSSSYA LMQQEKK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 4e-33 | 2 | 75 | 6 | 79 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019175205.1 | 2e-50 | PREDICTED: protein RADIALIS-like 4 | ||||
Swissprot | F4JVB8 | 1e-33 | RADL1_ARATH; Protein RADIALIS-like 1 | ||||
Swissprot | Q1A173 | 1e-33 | RADL6_ARATH; Protein RADIALIS-like 6 | ||||
TrEMBL | A0A068UG09 | 5e-41 | A0A068UG09_COFCA; Uncharacterized protein | ||||
STRING | XP_007160753.1 | 2e-39 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA202 | 24 | 231 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75250.1 | 3e-36 | RAD-like 6 |
Publications ? help Back to Top | |||
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