PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000021.1_g00014.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family C2H2
Protein Properties Length: 546aa    MW: 59458.4 Da    PI: 9.4211
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000021.1_g00014.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.94.2e-06224246123
                              EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                              y+C  Cgk F r  nL+ H r H
  Itr_sc000021.1_g00014.1 224 YVCDVCGKGFQREQNLQLHRRGH 246
                              9********************88 PP
2zf-C2H2163.3e-05301323123
                              EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                              +kC++C+k++  + +Lk Hi+ +
  Itr_sc000021.1_g00014.1 301 FKCEKCNKMYAVQCDLKAHIKIC 323
                              89******************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.17E-7223246No hitNo description
Gene3DG3DSA:3.30.160.602.7E-6224246IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.884224246IPR007087Zinc finger, C2H2
SMARTSM003550.0019224246IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280226246IPR007087Zinc finger, C2H2
SMARTSM00355130266296IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.17E-7296321No hitNo description
PROSITE profilePS501579.182301329IPR007087Zinc finger, C2H2
SMARTSM003559.1301327IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 546 aa     Download sequence    Send to blast
MIDVSKSTVW WKALLLVCYL TREVLLVCYL TREVNRIKKI LCKGFDQEGV GKNRTRDISG  60
RRSGIPAISP KSVPPVEALQ SVTYTGFAIC STPMVHDHAT WTAGCCHGRT LATKELKLSH  120
LTHLESLTGV DIWLKASALT QPCSKLALLA RLVVHSCPLR DRKKAKMKDS RQMTTVLPGE  180
ESAHKPSEQT VKPKRKRSTP GMPDAVEVEV IALSPKSLLE TNRYVCDVCG KGFQREQNLQ  240
LHRRGHNMPW KLKQRGADEV VKKRVYVCPE TKCSYHNPSK ALGDLSGIRK HFCRKHGKRT  300
FKCEKCNKMY AVQCDLKAHI KICGTRHYPC HCGAVFASDG ISPFSDGICP SLFGRFFVVK  360
DSFIAHKTVC YALKVTAPSA SPPTPSKAPS SSLGLGIGDN GGEEDFSSVF RLSLKSGNNE  420
EEALTPSAAI MERRVNPPVL SATELLQKAA QMGSTLSSGG SFFAGYELAM SATSAQWGMH  480
ANAPDLALEL ALRPASSGTA FAGSIFSTQT TLDFLGVGRE ANQSSSSSLL SSTSDATPWD  540
GHADQN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C7e-13297373358Zinc finger protein JACKDAW
5b3h_F7e-13297373358Zinc finger protein JACKDAW
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019174397.11e-157PREDICTED: protein indeterminate-domain 2-like
RefseqXP_019174399.11e-157PREDICTED: protein indeterminate-domain 2-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10324350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02670.12e-76indeterminate(ID)-domain 12