PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000016.1_g00031.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MYB_related
Protein Properties Length: 651aa    MW: 72426.8 Da    PI: 10.3634
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000016.1_g00031.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.71.7e-101061146
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT......TTS-HHHHHHHHHH CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg......kgRtlkqcksrwqk 46
                             + rW+t+E++ll+ avk++G ++W+++a ++         +t+  c++++++
  Itr_sc000016.1_g00031.1 10 KSRWSTWEELLLAFAVKRHGLKDWESVAMEVRtrtslpDLLTAQVCREKYRD 61
                             689*****************************88888866788888888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.7E-7465IPR009057Homeodomain-like
PROSITE profilePS500906.795563IPR017877Myb-like domain
SuperFamilySSF466891.09E-6768IPR009057Homeodomain-like
SMARTSM007173.8E-6965IPR001005SANT/Myb domain
PfamPF002497.5E-91062IPR001005SANT/Myb domain
CDDcd001673.66E-61262No hitNo description
SMARTSM002971.6E-14306411IPR001487Bromodomain
SuperFamilySSF473708.77E-18312413IPR001487Bromodomain
Gene3DG3DSA:1.20.920.101.3E-16315415IPR001487Bromodomain
CDDcd043695.86E-17316406No hitNo description
PfamPF004392.8E-10318396IPR001487Bromodomain
PROSITE profilePS5001411.519321392IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 651 aa     Download sequence    Send to blast
MSKLTEAKKK SRWSTWEELL LAFAVKRHGL KDWESVAMEV RTRTSLPDLL TAQVCREKYR  60
DLHRRFMNSE ELAVDVDAGG GGGVDIPWLE KLRQLRVTEL KQEVHRYDLS IQSLQLKVKR  120
MEEERDHSLK ESQNDAVKPD LEEDRKEKRS ENDEKNGDGE TPEKASGKSV SVTESEHENR  180
SFNESNSTEN RGTEEKAEPL SIEGGETKPD PQTKPVGEED SCNDSSDRRE ESNRTQDRKS  240
ENELAAETRD SVGASKESSD VQSTASLTKK RRKRADLSGG DGGNAATAAA AAAAAASPAT  300
ATKRESAVKS EPFVGLLDII RSRKHASMFE RRLDSQKTER YKSMIRRHVD FGTVQARIDD  360
GFYSGCPMSF YLDLLLLFNN AIVFFPKSSP EWRAAQQLRD IVTKELRNYR SEQPSSAKVE  420
PEQPKLERPD NSLVVKQKST APIVVCRKRS SFSGKAAGSG NKQENEKSPL NPKTAVNKSS  480
PSTPPEDDDS SKKMKPNEKP VTGVRSMRRT TKGRPAANAA SQSTNVKKSG GTTTNKQEAS  540
KMEEETSSVD KKRGAADFLK RIKKNSATKD TVVENKRVQQ KRKAGTEERR VVPPVKEAKV  600
VENSPSKRSV GRPAKRGREA ATSPPAGKRG KETNSASKEG SSKRPQKRSR R
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1268272KKRRK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019159340.10.0PREDICTED: serine/threonine-protein kinase PRP4 homolog
TrEMBLA0A1S3YW840.0A0A1S3YW84_TOBAC; uncharacterized protein LOC107780269
STRINGXP_009602840.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA42682136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44430.11e-104DNA-binding bromodomain-containing protein