PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Itr_sc000015.1_g00005.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
|
||||||||
Family | LBD | ||||||||
Protein Properties | Length: 191aa MW: 20684.6 Da PI: 7.4656 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 141.6 | 2.5e-44 | 7 | 106 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86 +Ca+Ck+lrr+CakdC++apyfp ++p+kfa+vhk+FGasn++k+l++lp ++r da+sslvyeA+ar+rdPv+G+vg i+ lq+q Itr_sc000015.1_g00005.1 7 PCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNISKMLQELPVQQRADAVSSLVYEANARMRDPVHGCVGAISYLQNQ 92 7************************************************************************************* PP DUF260 87 leqlkaelallkee 100 ++ql+ +la++++e Itr_sc000015.1_g00005.1 93 VSQLQMQLAVAQAE 106 *********99987 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 27.031 | 6 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 9.4E-44 | 7 | 104 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009965 | Biological Process | leaf morphogenesis |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 191 aa Download sequence Send to blast |
MGGGSSPCAS CKLLRRRCAK DCIFAPYFPP DDPHKFAIVH KVFGASNISK MLQELPVQQR 60 ADAVSSLVYE ANARMRDPVH GCVGAISYLQ NQVSQLQMQL AVAQAEILCI QMQHQEPAAI 120 LPPHHQLYGV GDDKSSLLVS TTSTAAANIN AAFTSNLDTL QQLQYQLAGF TSSSNPAAAT 180 QDPLKRESLW T |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 6e-48 | 3 | 108 | 7 | 112 | LOB family transfactor Ramosa2.1 |
5ly0_B | 6e-48 | 3 | 108 | 7 | 112 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_019163016.1 | 1e-109 | PREDICTED: LOB domain-containing protein 12 | ||||
Swissprot | Q8LBW3 | 7e-81 | LBD12_ARATH; LOB domain-containing protein 12 | ||||
TrEMBL | A0A2G9I6Q4 | 4e-87 | A0A2G9I6Q4_9LAMI; Uncharacterized protein | ||||
STRING | Aquca_030_00227.1 | 2e-86 | (Aquilegia coerulea) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA43 | 24 | 669 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G30130.1 | 2e-79 | LBD family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|