PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc000014.1_g00021.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | Trihelix | ||||||||
Protein Properties | Length: 210aa MW: 23701.9 Da PI: 5.0034 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 32.7 | 2e-10 | 16 | 84 | 2 | 70 |
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekk 70 Wt qe l+L++ + +e + + + + ++W+ +++ + + rs qCk kwe+l +y+++k +e k Itr_sc000014.1_g00021.1 16 WTLQESLTLVNEIKAVEAEAGGTMSSFQKWQLTVEHCNALEVCRSMDQCKRKWESLLDDYRRVKPWEAK 84 ******************************************************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 1.0E-8 | 15 | 83 | No hit | No description |
PROSITE profile | PS50090 | 6.342 | 16 | 72 | IPR017877 | Myb-like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009506 | Cellular Component | plasmodesma |
Sequence ? help Back to Top |
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Protein Sequence Length: 210 aa Download sequence Send to blast |
MERGSRRTRS QAAPDWTLQE SLTLVNEIKA VEAEAGGTMS SFQKWQLTVE HCNALEVCRS 60 MDQCKRKWES LLDDYRRVKP WEAKFWTASF GDRRRKELGL PEGFDLELFE AVDAYVKMQG 120 MDVGGADTDP DQDSDPEAQP DDSLIFLERG MHCRLAALIT KYSITLANEQ GFRIRERLIG 180 LLGLNPSAIG NLAHPRAGSI ICLRLVIDVN |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019176578.1 | 1e-104 | PREDICTED: trihelix transcription factor ASR3 | ||||
TrEMBL | A0A484N4F1 | 4e-73 | A0A484N4F1_9ASTE; Uncharacterized protein | ||||
STRING | XP_009603649.1 | 6e-55 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA8360 | 21 | 24 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31270.1 | 2e-43 | sequence-specific DNA binding transcription factors |