PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000013.1_g00001.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

Dof

Protein Properties

Length: 286aa MW: 30221.8 Da PI: 9.3717

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000013.1_g00001.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124.1	4.6e-39	45	102	3	60
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 +++l+cprCds+ntkfCyynny+l+qPr+fCk+CrryWtkGGalrnvP+Ggg+rknk+ Itr_sc000013.1_g00001.1 45 SENLRCPRCDSSNTKFCYYNNYNLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKNKN 102 57899***************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-24	46	101	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	6.9E-33	47	102	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.544	48	102	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	50	86	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 286 aa Download sequence Send to blast
MIQELLAAGN GGLLGGGESN NNVPKLSITD NSSGPLVSSS PTSRSENLRC PRCDSSNTKF 60 CYYNNYNLTQ PRHFCKTCRR YWTKGGALRN VPIGGGCRKN KNAIVSASMG KSAAAASTKW 120 KSSFLGGLEP EIPSSKSFLF GPPQNTNHQY PFLSLLRSGQ NPNPGAVMMN SGGEAPGLWR 180 NGQHRGQVQN GFILAGGEGQ AVGMPELIYQ RLMKSSSSSS ATNNYNVNCY EHPLALLGNA 240 ASSSSSSVLS PAILESAPVS AAGEFGYWNP SLSTWSDLPT TGGAYP

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019195539.1	1e-165	PREDICTED: dof zinc finger protein DOF2.4-like
TrEMBL	A0A1S3XH70	4e-74	A0A1S3XH70_TOBAC; dof zinc finger protein DOF5.7-like
STRING	XP_009775010.1	2e-74	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA88	24	419

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60200.1	3e-32	TARGET OF MONOPTEROS 6