PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000012.1_g00030.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

BES1

Protein Properties

Length: 642aa MW: 72611.5 Da PI: 6.4145

Description

BES1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000012.1_g00030.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF822	136.6	2.5e-42	45	182	3	137
DUF822 3 sgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeaeaagssasa 88 + rk+++kE+E++k RER+RRa +a++ +GLR++Gn++lp+r+D+n+Vl+AL+r+AGw+ve+DGttyr p +++ +++ + Itr_sc000012.1_g00030.1 45 KSRKEREKEKERTKFRERHRRAFTARVMTGLRQHGNFALPARSDMNDVLRALARQAGWIVEPDGTTYR----PA-APSNVVAYPAR 125 789***************************************************************....44.33344444445 PP DUF822 89 spesslq.sslkssalaspvesysaspksssfpspssldsislasa.......asll 137 + ++l+ lk++++++ ++ ++++++ ++++sp+s+ds+ ++++ +s++ Itr_sc000012.1_g00030.1 126 VVGNPLSaDPLKNCSTRASIDCQASVLRIDESLSPASFDSVVVSDTgtnadkyTSSS 182 555555546799****************************998875444443333 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05687	1.6E-40	45	185	IPR008540	BES1/BZR1 plant transcription factor, N-terminal
SuperFamily	SSF51445	1.25E-146	208	640	IPR017853	Glycoside hydrolase superfamily
Gene3D	G3DSA:3.20.20.80	1.5E-160	211	640	IPR013781	Glycoside hydrolase, catalytic domain
Pfam	PF01373	2.6E-79	235	617	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	3.1E-49	248	262	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	3.1E-49	269	287	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	3.1E-49	383	405	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	3.1E-49	456	475	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	3.1E-49	490	506	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	3.1E-49	507	518	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	3.1E-49	525	548	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	3.1E-49	563	585	IPR001554	Glycoside hydrolase, family 14

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0000272	Biological Process	polysaccharide catabolic process
GO:0048831	Biological Process	regulation of shoot system development
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0016161	Molecular Function	beta-amylase activity

Sequence ? help Back to Top
Protein Sequence Length: 642 aa Download sequence Send to blast
MDSQNPNPSY DRNSDPNPQP QPASRRPRGF AARIAGNAAS ATANKSRKER EKEKERTKFR 60 ERHRRAFTAR VMTGLRQHGN FALPARSDMN DVLRALARQA GWIVEPDGTT YRPAAPSNVV 120 AYPARVVGNP LSADPLKNCS TRASIDCQAS VLRIDESLSP ASFDSVVVSD TGTNADKYTS 180 SSPMNSSGCL EADQLIQEVH TGEHGNNFLG TPYVPVYVML SSGIINNFCQ LVDPGGVKQE 240 LQLLKSLNID GVVVNCWWGI VEGWKDQKYE WSGYRELFDI IRVMELKLLV VMAFNAYGGN 300 DFNVDISLPQ WVLKIGKDSP EIFFTDRVGR WNTECLSWGI DRERILEHRT GREVCYEFMR 360 SFRAEFNDLF TEGLISAVEI GLGASGELKY PSFSERNGWR FPGIGEFQCY DKFLLLSLKD 420 AAKKRGHPSW ATGPDNVGGY NSRPHDTRFF CERGDYDSYY GRFFLQWYTQ ALIDHADIIL 480 SAATEVFDET PLVVKIPGIH WWYKSSSHAA ELTAGYYNTS NRDGYSPLFE VLKKHNATMK 540 LVSKETQISP HDLDEAYADP NGLCWQVLNG AWDKGLAIAG HNAPRDYDRE TFMRLVETSK 600 PRNDPDRHHF TFFVLEQPWQ QVQTADTISE LEYFVKCMHG YA

Sequence ? help Back to Top

Protein Sequence Length: 642 aa Download sequence Send to blast

MDSQNPNPSY DRNSDPNPQP QPASRRPRGF AARIAGNAAS ATANKSRKER EKEKERTKFR  60
ERHRRAFTAR VMTGLRQHGN FALPARSDMN DVLRALARQA GWIVEPDGTT YRPAAPSNVV  120
AYPARVVGNP LSADPLKNCS TRASIDCQAS VLRIDESLSP ASFDSVVVSD TGTNADKYTS  180
SSPMNSSGCL EADQLIQEVH TGEHGNNFLG TPYVPVYVML SSGIINNFCQ LVDPGGVKQE  240
LQLLKSLNID GVVVNCWWGI VEGWKDQKYE WSGYRELFDI IRVMELKLLV VMAFNAYGGN  300
DFNVDISLPQ WVLKIGKDSP EIFFTDRVGR WNTECLSWGI DRERILEHRT GREVCYEFMR  360
SFRAEFNDLF TEGLISAVEI GLGASGELKY PSFSERNGWR FPGIGEFQCY DKFLLLSLKD  420
AAKKRGHPSW ATGPDNVGGY NSRPHDTRFF CERGDYDSYY GRFFLQWYTQ ALIDHADIIL  480
SAATEVFDET PLVVKIPGIH WWYKSSSHAA ELTAGYYNTS NRDGYSPLFE VLKKHNATMK  540
LVSKETQISP HDLDEAYADP NGLCWQVLNG AWDKGLAIAG HNAPRDYDRE TFMRLVETSK  600
PRNDPDRHHF TFFVLEQPWQ QVQTADTISE LEYFVKCMHG YA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wdq_A	1e-113	213	602	11	401	Beta-amylase
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00543	DAP	Transfer from AT5G45300	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019156606.1	0.0	PREDICTED: beta-amylase 8-like
Swissprot	Q9FH80	0.0	BAM8_ARATH; Beta-amylase 8
TrEMBL	A0A0V0IJN9	0.0	A0A0V0IJN9_SOLCH; Beta-amylase (Fragment)
STRING	Solyc08g005780.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1607	24	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G45300.1	0.0	beta-amylase 2

Publications ? help Back to Top
Soyk S, et al. The Enzyme-Like Domain of Arabidopsis Nuclear β-Amylases Is Critical for DNA Sequence Recognition and Transcriptional Activation. Plant Cell, 2014. 26(4): p. 1746-1763 [PMID:24748042]