PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000011.1_g00108.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family AP2
Protein Properties Length: 683aa    MW: 73717.1 Da    PI: 6.6631
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000011.1_g00108.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP247.64.3e-15264323155
                      AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                              s y+GV++++++gr++A+++d  +   g  ++ ++++lg ++ +e+Aa+a++ a++k++g
  Itr_sc000011.1_g00108.1 264 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqtRKgRQVYLGGYDKEEKAARAYDLAALKYWG 323
                              57*******************666664478446*************************98 PP
2AP246.59.2e-15366417155
                      AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                              s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ +++g
  Itr_sc000011.1_g00108.1 366 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIRFRG 417
                              57****************988532...5************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.16E-17264333IPR016177DNA-binding domain
PfamPF008475.7E-12264323IPR001471AP2/ERF domain
CDDcd000188.17E-22264333No hitNo description
SMARTSM003801.2E-29265337IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.7E-16265332IPR001471AP2/ERF domain
PROSITE profilePS5103219.23265331IPR001471AP2/ERF domain
PRINTSPR003675.4E-6266277IPR001471AP2/ERF domain
SuperFamilySSF541712.35E-17366427IPR016177DNA-binding domain
CDDcd000182.06E-24366427No hitNo description
PfamPF008471.2E-9366417IPR001471AP2/ERF domain
SMARTSM003803.5E-33367431IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.3E-18367425IPR001471AP2/ERF domain
PROSITE profilePS5103219.137367425IPR001471AP2/ERF domain
PRINTSPR003675.4E-6407427IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 683 aa     Download sequence    Send to blast
MAASMNNWLG FSLSPHHDAQ PQEISSISAS DDVSAGGGGG DCFDLSCRRM LPSASPFGIL  60
EAFSSRNNQS QEWSHMKDAE TMMFSQHGLE SQQEVAPKLE NFLGIGRDRQ LQPCTTATAA  120
AAANANNNPT FGLSMIKNWL RTNKTASDSG GCVAAAGMMS SSQALSLSMG AASQPSSAAA  180
ALPLLNISGG ENDHLHHQNN VIAASTNSAG CLSESENNSQ QTENGTSQSP VTAIATDAQT  240
STATANGLDA TSRKSIDTFG QRTSIYRGVT RHRWTGRYEA HLWDNSCRRE GQTRKGRQVY  300
LGGYDKEEKA ARAYDLAALK YWGPTTTTNF PISNYEKELE EMKHMTRQEY VASLRRKSSG  360
FSRGASIYRG VTRHHQHGRW QARIGRVAGN KDLYLGTFST QEEAAEAYDI AAIRFRGLNA  420
VTNFEISRYD VKSIMDSATL PIGAAAKRLK DAAEQSEMSQ RTEDTHNNIG LLSHFTDGIT  480
SYGAAAHHHG WPSIAFQQAQ PLNMHYPYAA AAAHHQRLPL WCKQEQPHDN ADVTHGGIQD  540
IHQLQLGYSG AAAAHNNSLQ PSVIHNLMGL DSSSMELSYG VTGDGGNNNG GGFVMMPIGQ  600
DGTHGFGENE VKPLGYNDNM FGGSSSSPDP YNQERNFYLY NSQQPPNPAA ACNNWVPTAV  660
PTISARAGNI AAVPATFPAW NDT
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes cell proliferation, differentiation and morphogenesis, especially during embryogenesis. {ECO:0000269|PubMed:12172019}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019193805.10.0PREDICTED: AP2-like ethylene-responsive transcription factor PLT2 isoform X1
SwissprotQ8LSN21e-138BBM2_BRANA; AP2-like ethylene-responsive transcription factor BBM2
TrEMBLA0A1S3YK470.0A0A1S3YK47_TOBAC; AP2-like ethylene-responsive transcription factor AIL1
STRINGXP_009610983.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA70992131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51190.11e-128AP2 family protein