PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000011.1_g00053.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family LBD
Protein Properties Length: 218aa    MW: 23299.4 Da    PI: 5.7627
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000011.1_g00053.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601346e-42551541100
                   DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86 
                              +CaaCk+lrr+C++ Cvlapyfp ++p kf ++h++FGasn++k+l++l e++r da++s+vyeA ar+rdPvyG++g i +lq+q
  Itr_sc000011.1_g00053.1  55 PCAACKILRRRCVDRCVLAPYFPPTDPLKFTIAHRVFGASNIIKMLQELAEDQRADAVNSMVYEASARIRDPVYGCAGAICQLQKQ 140
                              7************************************************************************************* PP

                   DUF260  87 leqlkaelallkee 100
                              +++++aela++++e
  Itr_sc000011.1_g00053.1 141 MSEVQAELAKAQAE 154
                              **********9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089125.93554155IPR004883Lateral organ boundaries, LOB
PfamPF031951.3E-4155152IPR004883Lateral organ boundaries, LOB
Gene3DG3DSA:1.20.58.609.2E-4107174No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MGYSTDNKRT TTTTTSQLTS SPSSPSSSAV SGGGVGSPAS PAAPPSSPPP VILTPCAACK  60
ILRRRCVDRC VLAPYFPPTD PLKFTIAHRV FGASNIIKML QELAEDQRAD AVNSMVYEAS  120
ARIRDPVYGC AGAICQLQKQ MSEVQAELAK AQAEILNLQC QNTNLKTLVC MQMASSSSSS  180
QQQQLSSPVQ EHLSYESGSF LLEDCSFSSD ILEPMLWG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A9e-425516011116LOB family transfactor Ramosa2.1
5ly0_B9e-425516011116LOB family transfactor Ramosa2.1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019194463.11e-111PREDICTED: LOB domain-containing protein 1-like
SwissprotQ9LQR03e-68LBD1_ARATH; LOB domain-containing protein 1
TrEMBLA0A1S4C9Q34e-83A0A1S4C9Q3_TOBAC; LOB domain-containing protein 1-like
STRINGXP_009611728.16e-84(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4324669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07900.13e-67LOB domain-containing protein 1