PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc000009.1_g00032.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | ERF | ||||||||
Protein Properties | Length: 221aa MW: 24370.9 Da PI: 4.4527 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 54.4 | 3.2e-17 | 48 | 99 | 1 | 56 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 s y GVr + +g+Wv+eIr+p++ + r++lg+f tae+Aa+a++ a+ +++ge Itr_sc000009.1_g00032.1 48 SSYVGVRMRA-WGKWVSEIREPKK---KSRIWLGTFATAEMAARAHDVAAVAIKGE 99 679****998.**********854...6**********************999886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.28E-28 | 48 | 108 | No hit | No description |
SuperFamily | SSF54171 | 1.24E-20 | 48 | 107 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 5.3E-11 | 48 | 98 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.601 | 49 | 106 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.4E-31 | 49 | 107 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 6.7E-35 | 49 | 112 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.8E-9 | 50 | 61 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.8E-9 | 72 | 88 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 221 aa Download sequence Send to blast |
MAESLYSRTE LSSSNNNNSC TTLLSATQNS NPNNHRKRLR QDGDNVASSY VGVRMRAWGK 60 WVSEIREPKK KSRIWLGTFA TAEMAARAHD VAAVAIKGEA ANLNFPELAG LLPRPASCSP 120 RDVRAAAIEA ARMDILLSRE PTAPEPASSS SSEIAAEPSQ DELGEIVELP ELAADTTYDD 180 FVFPDWDGWD WWPCSAADRA GEYYGEIVFD TGEFGNFLWQ H |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-15 | 39 | 107 | 1 | 73 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019191757.1 | 1e-117 | PREDICTED: ethylene-responsive transcription factor TINY-like | ||||
TrEMBL | A0A328E351 | 4e-51 | A0A328E351_9ASTE; Uncharacterized protein | ||||
TrEMBL | A0A484KVV5 | 4e-51 | A0A484KVV5_9ASTE; Uncharacterized protein | ||||
STRING | XP_009782186.1 | 3e-49 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA212 | 24 | 225 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32800.1 | 4e-34 | ERF family protein |