PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000006.1_g00059.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

Trihelix

Protein Properties

Length: 434aa MW: 49307.1 Da PI: 6.4682

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000006.1_g00059.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	79.3	5.7e-25	102	201	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgk.............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.t 72 +Wt+++v++Li ++ +++++ + + +kk++W++vs++m+ergf++sp+qC++k+++lnkryk+++++ +k+ + Itr_sc000006.1_g00059.1 102 KWTDDMVKLLIMVVYYIGDEGGPDGgvndkkggghgvlQKKGKWKSVSRAMMERGFSVSPQQCEDKFNDLNKRYKRVNDILGKGtA 187 7************99999997644566778888999********************************************55 PP trihelix 73 sessstcpyfdqle 86 ++++++ ++++++ Itr_sc000006.1_g00059.1 188 CRVVENQTLLESMD 201 99999999999997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	4.0E-21	100	226	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 434 aa Download sequence Send to blast
MESSGMYSSM GSGMLGLEMS LHHQIPPQQN PNHIQQQSQP SMVAFDHHHH QSQPAAKPGL 60 YGYGGKPKAQ GLTLSDEDEP ATADQSSAED GKRKMSPWQR MKWTDDMVKL LIMVVYYIGD 120 EGGPDGGVND KKGGGHGVLQ KKGKWKSVSR AMMERGFSVS PQQCEDKFND LNKRYKRVND 180 ILGKGTACRV VENQTLLESM DLSPKMKEEV KKLLNSKHLF FREMCAYHNS CGHGGATAAG 240 SSPEPPAPQQ NCLHSRESAR IQPNLPLKTP ENENEEGENK DSESDSEEDD DQDVEQSHYE 300 EEEDEADQGL SRKRPKKAGS FTPMLQQLST ELTNLCQDST RSPLEKRHWI RARMMQLDEQ 360 QIRVDSQKLE LAKQRLKWEK YSSKKEREME KEKLTNERKR LENDRMVLLL QQKELELLDH 420 LHHQRTSDPS SVTG

Sequence ? help Back to Top

Protein Sequence Length: 434 aa Download sequence Send to blast

MESSGMYSSM GSGMLGLEMS LHHQIPPQQN PNHIQQQSQP SMVAFDHHHH QSQPAAKPGL  60
YGYGGKPKAQ GLTLSDEDEP ATADQSSAED GKRKMSPWQR MKWTDDMVKL LIMVVYYIGD  120
EGGPDGGVND KKGGGHGVLQ KKGKWKSVSR AMMERGFSVS PQQCEDKFND LNKRYKRVND  180
ILGKGTACRV VENQTLLESM DLSPKMKEEV KKLLNSKHLF FREMCAYHNS CGHGGATAAG  240
SSPEPPAPQQ NCLHSRESAR IQPNLPLKTP ENENEEGENK DSESDSEEDD DQDVEQSHYE  300
EEEDEADQGL SRKRPKKAGS FTPMLQQLST ELTNLCQDST RSPLEKRHWI RARMMQLDEQ  360
QIRVDSQKLE LAKQRLKWEK YSSKKEREME KEKLTNERKR LENDRMVLLL QQKELELLDH  420
LHHQRTSDPS SVTG

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019187049.1	0.0	PREDICTED: lateral signaling target protein 2 homolog
TrEMBL	A0A328E2P2	1e-156	A0A328E2P2_9ASTE; Uncharacterized protein
STRING	evm.model.supercontig_5.104	1e-150	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6710	22	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10040.1	1e-85	sequence-specific DNA binding transcription factors