PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000006.1_g00010.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MYB
Protein Properties Length: 308aa    MW: 33914 Da    PI: 8.3067
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000006.1_g00010.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.33e-171462148
                             TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                             +g+W++eEd +l+d+++++G+g +W + +++ g++R++k+c++rw++yl
  Itr_sc000006.1_g00010.1 14 KGPWSPEEDAKLKDYIEKHGTGgNWIALPQKAGLRRCGKSCRLRWLNYL 62
                             79*********************************************97 PP
2Myb_DNA-binding36.89.1e-1269111246
                              SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
          Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                              g ++ eEd  +  + +  G++ W+ Ia+ ++ gRt++++k++w++
  Itr_sc000006.1_g00010.1  69 GEFSDEEDRVICSLYASIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111
                              789******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.224962IPR017930Myb domain
SuperFamilySSF466891.39E-2711109IPR009057Homeodomain-like
SMARTSM007171.1E-121364IPR001005SANT/Myb domain
PfamPF002495.3E-161462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.1E-251569IPR009057Homeodomain-like
CDDcd001675.51E-101662No hitNo description
PROSITE profilePS5129422.14463117IPR017930Myb domain
SMARTSM007173.2E-1167115IPR001005SANT/Myb domain
PfamPF002492.1E-1069111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-2370117IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MGRAPCCDKA NVKKGPWSPE EDAKLKDYIE KHGTGGNWIA LPQKAGLRRC GKSCRLRWLN  60
YLRPNIKHGE FSDEEDRVIC SLYASIGSRW SIIAAQLPGR TDNDIKNYWN TKLKKKLMGL  120
VSSSSSSSQK ITRPHQTPYP PPSILSSSPY SSPSISSPPP LIKSTNYFPS PTFHALSIPP  180
QHSSVAGAYV GPIHQNHQHH MVMTDRVLNF GGGAAANSCS SSDGSCTMMS SHGKDFDYST  240
ESYGGLQSFV YDGDVKPSVV ESGGCYGNNN PLDYSSLEEI KQLITTNNMC NNFFVDENKA  300
QENVVLYY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-25141177108B-MYB
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019187120.11e-160PREDICTED: transcription factor RAX2
TrEMBLA0A1S4BYE91e-105A0A1S4BYE9_TOBAC; transcription factor RAX2-like
STRINGXP_009612981.11e-106(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.13e-79myb domain protein 36