PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc000005.1_g00049.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | C2H2 | ||||||||
Protein Properties | Length: 252aa MW: 27559.9 Da PI: 5.6025 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.5 | 0.00094 | 106 | 128 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C++ F ++ L H++ H Itr_sc000005.1_g00049.1 106 FTCNFCKRKFYSSQALGGHQNAH 128 89*****************9988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.19E-6 | 103 | 133 | No hit | No description |
PROSITE profile | PS50157 | 11.219 | 106 | 133 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 108 | 128 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 252 aa Download sequence Send to blast |
MMKGSDFDLE VEASSENDYD IISQVGSNVS IQETLTEASK MSGLMELQLS SEPVSLDLSL 60 GFKPGPGCFD EMAGGQGSAA FSVSSTSESS NELTTQTTGS ANPRVFTCNF CKRKFYSSQA 120 LGGHQNAHKR ERTLAKRAMR MAIFSEKYAS FASLPLHSYT AAAAAARSLE IKTHSSLHGF 180 APTMRPLDFR TYSKFEPALL SQPIYVEDDE PKMLWPGSFR PEAASHPTTM NHVEMAQFQD 240 SDKSAPDLTL RL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as negative regulator of abscisic acid (ABA) signaling during germination and early seedling development. {ECO:0000269|PubMed:24808098}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019182446.1 | 1e-146 | PREDICTED: zinc finger protein 4-like | ||||
Refseq | XP_019182447.1 | 1e-146 | PREDICTED: zinc finger protein 4-like | ||||
Swissprot | Q39263 | 6e-37 | ZFP4_ARATH; Zinc finger protein 4 | ||||
TrEMBL | A0A061EDS8 | 5e-77 | A0A061EDS8_THECC; Zinc finger protein 4 | ||||
TrEMBL | A0A2N9GN10 | 3e-77 | A0A2N9GN10_FAGSY; Uncharacterized protein | ||||
STRING | EOY03130 | 8e-78 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1283 | 23 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66140.1 | 6e-38 | zinc finger protein 4 |
Publications ? help Back to Top | |||
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