PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000005.1_g00045.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family C2H2
Protein Properties Length: 455aa    MW: 51715.7 Da    PI: 9.4595
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000005.1_g00045.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.52.6e-0682104123
                              EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                              y+C+ C+ sF r  nL+ H r+H
  Itr_sc000005.1_g00045.1  82 YVCEVCNLSFQREQNLQMHRRRH 104
                              9*********************9 PP
2zf-C2H212.50.00044165187123
                              EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                              ++C+ C+k +  +s++k H++t+
  Itr_sc000005.1_g00045.1 165 WVCERCSKGYAVHSDYKAHLKTC 187
                              58*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576679.56E-579104No hitNo description
PfamPF139125.3E-681105IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.607.6E-581104IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.001282104IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.5782116IPR007087Zinc finger, C2H2
PROSITE patternPS00028084104IPR007087Zinc finger, C2H2
SMARTSM0035589129159IPR015880Zinc finger, C2H2-like
SMARTSM00355120165192IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 455 aa     Download sequence    Send to blast
MLATHTISLP SSSSAPTNTH GVTTTTTAKR KRKPAGTPGI TEPLLLYFSA IIFYSKIDLF  60
VADPDAEVVY LSPETLMESD RYVCEVCNLS FQREQNLQMH RRRHKLPWSL HKNERPPHEA  120
AAAARKRVYV CPEPSCVHHD PAHALGDLVG IKKHFRRKHS NHKQWVCERC SKGYAVHSDY  180
KAHLKTCGTR GHSCDCGRVF SRVETFIEHQ DSCKPGRKEI GGDRLQTPLK PAGFFPPIFN  240
LNLSTAEPHS SQYRLISERK EAQELIIFPV HKDGNHHLSS LSSSPHRHTL ELRELFPSKK  300
SEETPNSSAS AAIDDDDEED HNTLLRRALR LRSETKEVMK VAMEQKAKAA EKRKQARVLM  360
EMANQEMEKA KKIREQAFVT EIRNSQLQKD RLTWQMLIGS SSGGQHRITC DSCKMNRSKA  420
FFQESAVNYY FPSAITHGEN GDNNNSLMFR PLRPS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C3e-16163213555Zinc finger protein JACKDAW
5b3h_F3e-16163213555Zinc finger protein JACKDAW
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019182738.10.0PREDICTED: protein indeterminate-domain 16-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10222482
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25250.12e-89indeterminate(ID)-domain 16