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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Itr_sc000003.1_g00059.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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| Family | HB-PHD | ||||||||
| Protein Properties | Length: 1092aa MW: 120930 Da PI: 4.2531 | ||||||||
| Description | HB-PHD family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | Homeobox | 42.7 | 9.8e-14 | 941 | 988 | 5 | 52 |
SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHH CS
Homeobox 5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrR 52
+f ++ +++L+e+F++n+yp+++ +e LA++lgLt rqV WF N R
Itr_sc000003.1_g00059.1 941 LRFGEDAIKRLNEAFKENHYPKRNVKESLARELGLTLRQVDKWFGNTR 988
5788999***************************************99 PP
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| 2 | PHD | 38.6 | 2.5e-13 | 522 | 577 | 1 | 51 |
SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS
PHD 1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCkek 51
+C+ Cg+ ++++++lCdg C++ fH+ Cl+++l +e++p g wlC+ C++k
Itr_sc000003.1_g00059.1 522 FCAKCGSkdLPADNDIILCDGaCERGFHQLCLEPPLLKEDIPPGdeGWLCPGCDCK 577
699***966566********66********************9999*******985 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| SuperFamily | SSF57903 | 2.21E-13 | 512 | 580 | IPR011011 | Zinc finger, FYVE/PHD-type |
| Gene3D | G3DSA:3.30.40.10 | 1.7E-12 | 518 | 577 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
| PROSITE profile | PS50016 | 10.985 | 520 | 577 | IPR019787 | Zinc finger, PHD-finger |
| SMART | SM00249 | 2.3E-9 | 522 | 575 | IPR001965 | Zinc finger, PHD-type |
| CDD | cd15504 | 4.64E-26 | 522 | 574 | No hit | No description |
| Pfam | PF00628 | 7.2E-11 | 522 | 577 | IPR019787 | Zinc finger, PHD-finger |
| PROSITE pattern | PS01359 | 0 | 523 | 574 | IPR019786 | Zinc finger, PHD-type, conserved site |
| PROSITE profile | PS50071 | 13.685 | 934 | 988 | IPR001356 | Homeobox domain |
| Gene3D | G3DSA:1.10.10.60 | 7.9E-14 | 935 | 988 | IPR009057 | Homeodomain-like |
| SMART | SM00389 | 1.4E-10 | 936 | 998 | IPR001356 | Homeobox domain |
| SuperFamily | SSF46689 | 1.97E-12 | 936 | 995 | IPR009057 | Homeodomain-like |
| CDD | cd00086 | 1.66E-12 | 938 | 988 | No hit | No description |
| Pfam | PF00046 | 4.3E-11 | 942 | 988 | IPR001356 | Homeobox domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| GO:0005515 | Molecular Function | protein binding | ||||
| GO:0008270 | Molecular Function | zinc ion binding | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 1092 aa Download sequence Send to blast |
MTETVYSGTG ESNVKCSDPE SVERLTLSDN ILKNSNCESL GENAIEFECQ NRDSEPLGQT 60 MAIRNGNAER KPAETTVAEF ELVEELSPNY ISIDSNQEQK RPEFKDCTEN SKTEQIIFPS 120 GNEATNSTVE YSAEPLQVMP AVSMDSNNEQ KIPSLEDCGQ NSKFEDNVGT SSTIESSIEP 180 PKELPTENIF TDSNLEQKNL PLKNCGFHSN LVMALPSENK DNNFPVQYPA EPPNDVIKNH 240 DFEQLKETQK DAVEIPSEPL GPKSENDENL GERTIVESVC NEVLLPSGDV AVNSSLEQKE 300 SAPEDLTVDS SFKNLELLHE NEEAISIVDH LAELHGDASE NPGQDLSKIC RDSNENSTQL 360 ECADERPTGC SRKRKATLGS PVISTIVLRS RTQEKPKPVE PIHASADDSA TDEKKRKRRK 420 RKHSKQIAVN EFSGIKSHLR YLLSRIKYEQ NLIDAYSAEG WKGQSLEKLK PEKELQRAKS 480 GIFHYKLKIR DLFQRIDTSL SQGKLPESLF DSDGQIDSED IFCAKCGSKD LPADNDIILC 540 DGACERGFHQ LCLEPPLLKE DIPPGDEGWL CPGCDCKVDC TDLLNDLLGT DLSVTDSWEK 600 VFPEEAAAAA SGKQLDDISG LPSDDSDDDD YNPDNPEVEE NVSQDESNSD ENDSSDASFD 660 LETTANDDIL HGLPSEDSED EDFDPDAPDH DEQVMQDSSS SDFSSDSEDF GVVFENNTSP 720 GQDQCEKIKV GGAKQHCLET TANDDILLGL PSEDSEDEDF DPDAPDHDEQ VMQESSSSGF 780 TSDSEDFGVV FENNTSPGQD QCEKIKVGGA KQQSLKDEVS YLLHSSTVLA SGKRQVERLD 840 YKKLHDETYG IASSDSSDED YEDNSAPKRR KKGSDKAALK SSDQSPLDAM DKNFKQNEIE 900 HTANGSASNT ANEIEHTANT ANRSASNMVV SESGSSGKKN LRFGEDAIKR LNEAFKENHY 960 PKRNVKESLA RELGLTLRQV DKWFGNTRWS FYHPSASRKE PIASETPPKS GISPPQMEEA 1020 TPDVQECLKE DVRLMQPETK ETDVKNHTTP ESKTTSNADD QVSNQSSKTQ RSKKRNTQVD 1080 IANSQRARRS NR |
| Nucleic Localization Signal ? help Back to Top | |||
|---|---|---|---|
| No. | Start | End | Sequence |
| 1 | 413 | 418 | KKRKRR |
| 2 | 413 | 420 | KKRKRRKR |
| 3 | 413 | 421 | KKRKRRKRK |
| 4 | 414 | 419 | KRKRRK |
| 5 | 415 | 421 | RKRRKRK |
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_019170135.1 | 0.0 | PREDICTED: homeobox protein HOX1A-like isoform X1 | ||||
| TrEMBL | A0A328DIQ8 | 0.0 | A0A328DIQ8_9ASTE; Uncharacterized protein | ||||
| STRING | XP_009775281.1 | 0.0 | (Nicotiana sylvestris) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Asterids | OGEA7220 | 21 | 26 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT3G19510.1 | 1e-81 | Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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