PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000002.1_g00038.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family AP2
Protein Properties Length: 430aa    MW: 48417.7 Da    PI: 6.942
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000002.1_g00038.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP234.93.9e-1177133155
                      AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..krkrfslgkfgtaeeAakaaiaarkkleg 55 
                              s+++GV++++++gr++A+++d  s+n   k+k  + g ++ +e Aa+a++ a+ k++g
  Itr_sc000002.1_g00038.1  77 SRFRGVSRHRWTGRYEAHLWDkLSWNAtqKKKGKQ-GAYDEEEAAARAYDLAAVKYWG 133
                              789******************88889994446666.*******************998 PP
2AP252.89.8e-17200251155
                      AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                              s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa+a++ a+ +++g
  Itr_sc000002.1_g00038.1 200 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYSTQEEAARAYDIAAIEYRG 251
                              89****99**********99966...3.6*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541714.25E-1477142IPR016177DNA-binding domain
PfamPF008472.6E-777133IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.1E-1278141IPR001471AP2/ERF domain
SMARTSM003803.0E-1678147IPR001471AP2/ERF domain
PROSITE profilePS5103217.91278141IPR001471AP2/ERF domain
CDDcd000182.67E-24200261No hitNo description
SuperFamilySSF541716.21E-18200261IPR016177DNA-binding domain
PfamPF008474.1E-12200251IPR001471AP2/ERF domain
PROSITE profilePS5103219.045201259IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.1E-18201260IPR001471AP2/ERF domain
SMARTSM003801.0E-26201265IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 430 aa     Download sequence    Send to blast
MYAMAAMKSE GAERCGRRRS IREVEDNDAA NTGDRRIKRR RRDAENCDEI QTQKQQEVVE  60
TTTTTTLAAP PTVKRSSRFR GVSRHRWTGR YEAHLWDKLS WNATQKKKGK QGAYDEEEAA  120
ARAYDLAAVK YWGTSTCTNF PAGLPPCGPL PAKVTRQGLP SAHFRISEYE KEIEFMQTVT  180
KEEYLATLRR KSSGFSRGAS KYRGVARHHH NGRWEARIGR VFGNKYLYLG TYSTQEEAAR  240
AYDIAAIEYR GMNAVTNFDL STYIRWLKPG VNSPLLEVDI SQESKPNAVP EALLPSNFHS  300
AMANISQTEP YRADDNNEQV FEAKLPINRC RNSSSPTALS LLLRSSIFRE LLEKNSNISD  360
EEEDDRKTVY GDQQNDDQVG NGDEYAAADI YDATADIPFL LSSDGHGGFE LQGEFRFNCD  420
SSANVVGTIL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13442RRIKRRRRD
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019185446.10.0PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A438CTG11e-150A0A438CTG1_VITVI; Ethylene-responsive transcription factor WRI1
STRINGVIT_14s0108g00050.t011e-151(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA34402145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54320.34e-70AP2 family protein