PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000001.1_g00042.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family C2H2
Protein Properties Length: 426aa    MW: 45837 Da    PI: 9.4677
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000001.1_g00042.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.17.3e-06185207223
                              EETTTTEEESSHHHHHHHHHH.T CS
                  zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                               CpdCg++F+  ++L++H+ + H
  Itr_sc000001.1_g00042.1 185 ACPDCGEVFPKIESLEHHQAVrH 207
                              6******************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS000280184207IPR007087Zinc finger, C2H2
PROSITE profilePS501578.746184212IPR007087Zinc finger, C2H2
SuperFamilySSF563991.06E-25209423No hitNo description
Gene3DG3DSA:3.90.228.105.2E-10210423IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 426 aa     Download sequence    Send to blast
MALLTFLPPE KQQQQQQPNT QKKQQRKRKQ QLQNPKKQPN KPAKPPSSWD SFKSLLTCKQ  60
VEGSAVHDPA KNGAAGYVLG GPCGSICSFR DVVHGNTSRV VHRADNSPES SSLGQETRLL  120
SKKNGGCSGN SGSSSRSLPA AARSHGASSY GGSSRAMQFR KLSGCYECHT IVDPSRYPMP  180
RTICACPDCG EVFPKIESLE HHQAVRHAVS ELGPEDSSRN IVEIIFKSSW LKKDNPVCKI  240
ERILKVHNTQ RTIQRFEDCR DAVKVRANAA GKKNPRCAAD GNELLRFYCT TLTCALGARG  300
ASSLCGSLPG CGVCTIIRHG FQGNKVAGIR TTASSGRAHD CPNGGNDGRR AMLVCRVIAG  360
RVRRVVEDTG AGDEEAAAPA GLSAGAGSYE SVAGYGGIYS NLEELYVFNP RAILPCFVVI  420
YKAMES
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12429QRKRKQ
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1825722e-54AC182572.2 Erythranthe guttata clone MGBa-75A14, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019153362.10.0PREDICTED: uncharacterized protein LOC109149815
TrEMBLA0A068UFR50.0A0A068UFR5_COFCA; Uncharacterized protein
STRINGXP_006473648.10.0(Citrus sinensis)
STRINGXP_009616115.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA51952334
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75710.11e-162C2H2-like zinc finger protein