PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MLOC_9982.3

Organism

Hordeum vulgare

Taxonomic ID

4513

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Family

Nin-like

Protein Properties

Length: 942aa MW: 102867 Da PI: 7.8124

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MLOC_9982.3	genome	IBSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	89.4	2.8e-28	626	676	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek++sl +l++yF++++kdAA++Lgvc+T+LKriCRq+GI+RWP+Rkik++ MLOC_9982.3 626 EKTVSLPVLRQYFAGSLKDAARSLGVCPTTLKRICRQHGINRWPSRKIKKV 676 799**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.45	615	696	IPR003035	RWP-RK domain
Pfam	PF02042	1.1E-24	629	676	IPR003035	RWP-RK domain
SuperFamily	SSF54277	2.03E-19	834	927	No hit	No description
Gene3D	G3DSA:3.10.20.240	3.1E-23	841	925	No hit	No description
SMART	SM00666	7.2E-21	844	927	IPR000270	PB1 domain
PROSITE profile	PS51745	18.007	844	927	IPR000270	PB1 domain
Pfam	PF00564	8.8E-15	845	925	IPR000270	PB1 domain
CDD	cd06407	3.95E-39	845	925	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 942 aa Download sequence Send to blast
MKGRSKARAG PNKARTSTAN FQFSFFHLAA AAAAAERASR QTGAPLERNG GGAALWWSTE 60 PFLELLLAGG GGQRRAKEEE GGKSRRGTHH TITSSEGSLT CMEGGDAQPG ISVGRALSSE 120 GDLDLLEQLL SGDNAWLEVA PNTSRSPNFF ASPSTFLSDA TTTTTMPAGA SSALWIQPPS 180 STVRQRFEQA LDHIKQMQRD AGMLVQLWVP QKNSDGKLVL TTSGQPFTLD NTSDRLIQFR 240 DVSTHYHFSA DAGSEASPVG LPGRVFIGKL PEWSPDVRLF TSYEYPRVKY AQDLDVHGTM 300 GLPVFEKGSY SCLGVMELIM TRQKLNFTSE INNICNALQA VNLRSTEVSS TPRATKFNSA 360 SYRDALPEIL EVLRAACVTH NLPLAQTWVT CAQQGKGGSR HTDENYPYCI STIDTACYVN 420 DPQMQNFHDS CSDHHLLRGQ GVAGKAFETN QPCFLPDIGS SAKEHYPLSH HAKIFNLKGA 480 VAIRLRCTRT GTADFVLEFF LPTNCEALEE QKAVLDSLSG TMRNTCRTLR VVTDKEMGDE 540 AMLDRNELNT FGPQGKNKVE ELSFGDQATE HREEASWTSL AGTSKESDLA ELSMHGMLSP 600 EGQGLSLAGA QTSAQGSKGK RRTKTEKTVS LPVLRQYFAG SLKDAARSLG VCPTTLKRIC 660 RQHGINRWPS RKIKKVDHSL RKLQQIIDSV HGGETAFQLN TLYKDLTNTS VSSDNNLSGS 720 ITVPPHKQSN LTDFERHGHH RLSNNVPSTS HSHSSCSQSS DSSPSSCSGG STKYPPQAGV 780 DLLMSGNPVN HSPVQTLQTE NASIIGHFPV QEAPDLLHNL NQKALGGQHS SRSPSPPKQN 840 ADTGMRIKAA FGSEKVRFRL KPECSFQELK QEMARRLSIV DISFLIVKYL DDDLEWVLMT 900 CDADLQECLH VYKLANLQTV KISVHLAPIP EARVTVGRTG LS

Sequence ? help Back to Top

Protein Sequence Length: 942 aa Download sequence Send to blast

MKGRSKARAG PNKARTSTAN FQFSFFHLAA AAAAAERASR QTGAPLERNG GGAALWWSTE  60
PFLELLLAGG GGQRRAKEEE GGKSRRGTHH TITSSEGSLT CMEGGDAQPG ISVGRALSSE  120
GDLDLLEQLL SGDNAWLEVA PNTSRSPNFF ASPSTFLSDA TTTTTMPAGA SSALWIQPPS  180
STVRQRFEQA LDHIKQMQRD AGMLVQLWVP QKNSDGKLVL TTSGQPFTLD NTSDRLIQFR  240
DVSTHYHFSA DAGSEASPVG LPGRVFIGKL PEWSPDVRLF TSYEYPRVKY AQDLDVHGTM  300
GLPVFEKGSY SCLGVMELIM TRQKLNFTSE INNICNALQA VNLRSTEVSS TPRATKFNSA  360
SYRDALPEIL EVLRAACVTH NLPLAQTWVT CAQQGKGGSR HTDENYPYCI STIDTACYVN  420
DPQMQNFHDS CSDHHLLRGQ GVAGKAFETN QPCFLPDIGS SAKEHYPLSH HAKIFNLKGA  480
VAIRLRCTRT GTADFVLEFF LPTNCEALEE QKAVLDSLSG TMRNTCRTLR VVTDKEMGDE  540
AMLDRNELNT FGPQGKNKVE ELSFGDQATE HREEASWTSL AGTSKESDLA ELSMHGMLSP  600
EGQGLSLAGA QTSAQGSKGK RRTKTEKTVS LPVLRQYFAG SLKDAARSLG VCPTTLKRIC  660
RQHGINRWPS RKIKKVDHSL RKLQQIIDSV HGGETAFQLN TLYKDLTNTS VSSDNNLSGS  720
ITVPPHKQSN LTDFERHGHH RLSNNVPSTS HSHSSCSQSS DSSPSSCSGG STKYPPQAGV  780
DLLMSGNPVN HSPVQTLQTE NASIIGHFPV QEAPDLLHNL NQKALGGQHS SRSPSPPKQN  840
ADTGMRIKAA FGSEKVRFRL KPECSFQELK QEMARRLSIV DISFLIVKYL DDDLEWVLMT  900
CDADLQECLH VYKLANLQTV KISVHLAPIP EARVTVGRTG LS

Cis-element ? help Back to Top
Source	Link
PlantRegMap	MLOC_9982.3

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK358600	0.0	AK358600.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1079K24.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020196252.1	0.0	protein NLP1-like isoform X1
TrEMBL	A0A287S4U7	0.0	A0A287S4U7_HORVV; Uncharacterized protein
STRING	MLOC_9982.2	0.0	(Hordeum vulgare)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76350.1	0.0	Nin-like family protein